NONHSAT077221

From LncRNAWiki
Revision as of 07:02, 13 October 2014 by 73.162.128.239 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT077221

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

2346 nt

Genomic location

chr2-:228573101..228575446

Exon number

1

Exons

228573101..228575446

Genome context

Sequence
000001 CATAATGACC CTCTTTGATA ACGTGTTTAT GCTAATAAGA TAGCTTGGAG TGGGGTCCAT AGATAGTCTA AAAACTGGGG 000080
000081 GGGAAGGAGC TGAAGATCAT GCTCTGTAAG ATTCGTTTTT CTTTTTTTTA ATATTTAAAG AGATGGGGTC TCTATGTTGC 000160
000161 CCAGGCGGGT CTTGAACTGG CTAATTTTTA TATTTTTAGT ACAGACCGAG TTTTGCCATG TTGGCCAGGC TGGTCTCGAA 000240
000241 CTCCTAACTT CAGGTGATCC ACCCGTCTCG GCCTCCCAAA GTGCTGGGAT TACAGGTGTA AGCCACCGCA CCCAGCCTTA 000320
000321 TTTTGTATTT TTGTAGAGAT GGAGTCTGGC AAACATATAA TTACCAATTT ATTGCTCTTC TGTTTGAAAG AAGTGTTTTG 000400
000401 ACTGCAGTAA AGTTCTAGCC TATTGTGAAA ATCAGGCTAG CCCATTTCTC AGATGGCTGC CTGGCTAGAC ACCCTCTCTG 000480
000481 AGATGGCTGG AATGATTAGT AGAAAGGAGT GGGCAGGAAG TAGGTGGAGA GTGGGGATTC TAGATCAGGG GTCCTATGGC 000560
000561 CTGTTAAGAA CGGGCCATTA CAGCAGGAGG TGAGTGGCGG GCAAGCAAGC ATTACCACCT GAGCTCCGTC TCCCGTCAGA 000640
000641 TCAGTGGCGG CATTAGATTC TCCTGGAAGT GCAAATCCTA CTGTGAACTG TGCATGCAAG GGATCTAGGT TACGAGCTCC 000720
000721 TTGTGAGAAT CTAATGCCTG ATGATCTGAG ATGGAACAGT TTCATCCCAA AACCATTCCC CCTAACTCCT CCCCCATTTT 000800
000801 TTCATGGAAA AATTGTCTTC CATGAAACGG GTTCCTGGTG CCAGGAAGGT TGGGTACCAC TATTGTAGAT AATTTCCTTC 000880
000881 CAAATTACTG GCATCTGGGT TAATTCTGGC AGTATTGTCA GTACAACATG GACGAGGACT TGATAAAGTG ATTTCTTTCC 000960
000961 ACCCACCCAA TATCTTGTTC TTCTCCAGGC AGTCAGTTGT GGGAAACTTA TCAGGTTTGA GGGAGTTACT TGCTTTCATC 001040
001041 AGGTCACCTT GTCCCCTACC TCAGGGAGCC CCACAGCTCT GAGTGCTTTG GCTGTGGGAG AATTCCATCC TCTGGGTGTG 001120
001121 CAAGTGGGTG TGTATGGGTG GAGGAATCTG ACCAAATAAG GCTTTACCTT AGCTAGAAAA TCACCCTGGC TTCAGGAAAC 001200
001201 CCACCAGTGC ATGCCAGCTT TGCAGTTCTT TTGTTGTTGT TGTTTTTGGG ACAGAGTCTC GCTCTGTCAC CCAGGCTGGA 001280
001281 GTGCATTTGC TCAATCTTGG CATTTGCAAC CTCCACTTCC CAGGTACAAG TGATTCTCGT GCCTCAGTCT GCCAAGTAGC 001360
001361 TGGAATTACA GGTGCCCGCC ACCATGCCTG GCTAATTTTT GCATTTTTTA GTTTGAGACG GGGTTTCACC AATGTTGGCC 001440
001441 AGGCTGATCT TGAACTCCTG ACCTCAAGTC ATCCACCCGC CTCAGCCTCC CAAAGTGCTG GGATTACAGG CATGAGGCAC 001520
001521 AGTGCCCGGC CTCAGTTTCT GCAGTTCTTG CTTTTTAACA GTTGTTTACC CTACAAAAAT GGAAAATATA CTTGGAAATA 001600
001601 TTTGTGGACA TAGGGCTTTT AAGTATATGC ACTTAGAGAT AGATACAGAC AACCTATGGA TTAGGAAATA GGACACTATC 001680
001681 CATGTCTGAA ATTTAAATAA GGTCCAAATT AGCTTAGATC CAATATGATT CCCCAATGCA TATATGAACA ATACGTGAAC 001760
001761 ATTGTTGTGT GCACAACTAT GGAAAGGTCT TAATCCGCAC AGTGACTCTG AGATAAGACT CACTGAAGGA AATACAGCAG 001840
001841 CAAACCCAGG AGATGTGAGT TCCAATCTTC ATTTGTAACT CACTCCAAAT GAGATCCTAG CAATGAAGTA ATTTTTTTTT 001920
001921 GTTTCCCACT AAAAACAAAT AAACAAAAAC CTTAGTTTTT CTATGCTACA GAATTAGGAT GACAAATGAA CTTATCTTGC 002000
002001 AGTCACTATA AGAACACTGA CAGTTTCAGA GATAGTATTA AAAATCAACT AAACACTTAT AATTATTGTG AAAGCATTTA 002080
002081 TCTATCAAAG AAGGTTAGCC TGCAGCCAGT TGGAAAGTTT TTTTTGTTGT TTTTTTGGTT TGTTTGTTTG TTTGTTTGTT 002160
002161 TGTTTGTTTG ATAGAGACAG GGTCTCACTA TGTTGCCAGG CTCTCCTGGG CTCAAGCAAT CCTCCCGCCT CAGCCTCCCA 002240
002241 AAATGCTGGG ATTACAGGCA TGAGCCACCG TGTCCGGCTG CCAGGTGGAA AGAACAATTT AAGGAGATGG TTAAAAGTGG 002320
002321 AAAAGCCAAT AACATGGTAA TAATTG
[back to top]

Predicted Small Protein

Name NONHSAT077221_smProtein_1985:2170
Length 62
Molecular weight 7291.4691
Aromaticity 0.213114754098
Instability index 40.2426229508
Isoelectric point 8.78057861328
Runs 8
Runs residual 0.0216694931223
Runs probability 0.0569356120828
Amino acid sequence MNLSCSHYKNTDSFRDSIKNQLNTYNYCESIYLSKKVSLQPVGKFFLLFFWFVCLFVCLF
V
Secondary structure LLLLLLLLLLLHHHHHHHHHHHLLLLEEEEEEEEEEEEEELLLHHHHHHHHHHHHEEEEE
L
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH
H
PiMo i???????????????????????????????????????????????????????????
?