NONHSAT077455
Revision as of 07:08, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT077455 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2782 nt |
Genomic location |
chr2+:233740509..233743414 |
Exon number |
2 |
Exons |
233740509..233740832,233740957..233743414 |
Genome context |
|
Sequence |
000001 GGGAAATGTG AGGGCTAGTG CAGCGCTGAG CCCAGACCCC TCACACAGCG CTACCGGCAA CTTGCTTAAC CTAGAGGTGG 000080
000081 GGGGTGACGT CCCTGTCGGC CCCGTCACCT GGGGCCCCAG CACCTCTCCT TGGCTTTGCA GACGATGTTC CACAGGAGCC 000160 000161 CGTGCCCACG CTGTGGAACG AGCCGGCCGA GCTGCCGTCG GGAGAAGGCC CCGTGGAGAG CACCAGCCCC GGCCGGGAGC 000240 000241 CCGTGGACAC CGGTCCCCCA GCCCCCACCG TCGCGCCAGG ACCCGAGGAC AGCACCGCgc aggagcggct ggaccagggc 000320 000321 ggcgGGTCGC TGGGGCCCGG CGCTATCGCG GCCATCGTGA TCGCCGCCCT GCTGGCCACC TGCGTGGTGC TGGCGCTCGT 000400 000401 GGTCGTCGCG CTGAGAAAGT TTTCTGCCTC CTGAAGCGAA TAAAggggcc gcgcccggcc gcggcgcgAC TCGGCTGCAC 000480 000481 TCCTcacgcg cctgtatgtc cgcgcgtgcg tgtccgcgca tgcaggtgtg ccagagcgtg agcgcgcgca ggcgagcgct 000560 000561 cagggcgggg gtgcgcgcgg ggccgagggt gggtgccgtg cacgcgcgcg ggtccggagg cgcgcccgAA TTCCCCGCAG 000640 000641 GGGCGCCGGG GCGTGCGTGA GCGCACAGCA TGTCCGAGCC CGCCTGCGTG TGGCGTGCAC CTGAGCGCGC GCAGGGCCGC 000720 000721 GCGGCTCGGC GTCCCCGTGC ACCACGGCTG GAGTGCCTCA GGAGCGCGCC GCATGTGCGT GCCCGGTGCG CGTGCGCCGG 000800 000801 GGCCGCCAGG GCATCGGAGC GGGTGTGCGG CCAGCGGTCT TAGCCCGTCC GGGGGCACCG TCACGGTCAG GGCCACGCCA 000880 000881 CGGGCGGCCC CTTCTCCCGG CGCCGCCTCC TCTGCCTGGG CGCGGGCCGA GGCCCTCGCC GCGCTCCCCG GGGCCTGCCT 000960 000961 CCCATCCCGC TCCGCTGGGG TTCAGAGCGT TCCGTGAGGA GGTAAGCGCT AGGGCAGGAG AGGCCGACAG AGACCCCGGG 001040 001041 GCCCGCCGCT CCTTGAGGCC GGGGTTGGGG AGGGCAGGGG CCGTCGGCTC TCCCAGCCAG AGGCCGCGTG GTTTTGGGGG 001120 001121 ACGTCTTGAC TCTGAGTCCT GCAGCCAGGG CCCCATCCGC GGGCTCAGAC CAGCAGCCCC AAGCCCCCCT CTGCCCAGGG 001200 001201 AGCCTCAGGA GCAGGATGAG TCGAGAGTCG ACGCCGGACA CGGCCCGCCC CTGCTTCCTA CTCTCACCCC CAGGCCTGGC 001280 001281 TGGGGGCCGG CAGCCCCCAC GCCCACGGTT GGTTTGTTCA GGGAGAGAAA ACGGCTTTCC CAGCTCTACT CACCTCACTT 001360 001361 CACCCTCAGA GAGTCGGGGC GGAGTGAGGG TGAGGAGCCT GGTCCAGGGT CCCCACCTCG GAAGCATTTA GAGATGTAAA 001440 001441 CTTTGATCCT TTGATCATTT AACCTGCTCA GCACAGCAGG AAGTGGGAAC TTGGTCCCTA CCCCAGTCCC CAGGGCCTTT 001520 001521 GGAGGGAAGG GTTGGACAGT TTGGAGGCCA GCAGACCCCT TGGGGACAGC TTAATGTATC TGAAGATTCC TGAGTGGGAA 001600 001601 TGTTGCTGGA GGGCAAGCTG CTTCTCTTTT TTAAAAATTC ATTTTCTCTA GCAGCTGTTT TGGCCCCTTT GGTGTCCCTG 001680 001681 AGCTCCCCAT GGCACTGTTT CCTGCCGTGA CTTTCTCCTC CTGGACACTG GAGCCCAGGT GGTGCCCGCG CACCTCTCAC 001760 001761 ACACTGGGGG ATAGGGTCAA GGCCTCATCC AAGTCTGTTA ACAGCTTCCC ACTCAACCAG TCTCCCCAAA ATACACTGTG 001840 001841 AGTTCAATGA TTCTGCTTAT AAAGGAGTGC TATGAAACTG ACCTATTTTC CTAATTGGTT AACTGACTTC ATCTCACATA 001920 001921 ACCTTGAGTA ACCAAAGCCT TCATCAGAGC GGACGATCCA ACCCAACATG CTGTTTCCCA TCCTCAAAAG GCACGGGGAC 002000 002001 CAATGGCCAC CCAACTCCTT CCCAACCCTC CCCTCCAGGG ACGAGAGATG GCCCCCTCTT TCCCTTTCCC CACTCTGCAA 002080 002081 GCACTCCCCC ACCAACGGGT GCATCACAGC CCCTCACTGG GACCAGGGGG CCTCCCTCTC CGGTGGAACC AGTGTCACAT 002160 002161 GCCTGTGCAT CTCTGTGATT CTCAGAGGGT CTGAGGTCCG AGCACCCTGC TGTGGCCTGT GGGAAGACGC TACAAAGTCC 002240 002241 CACTGGATCT AAACCAGAGG CCTGTTCTGG CGAGCAGGGA AACTGTGTCC TGGCAGAGAT CGTGGTCCTG GGCACACAGG 002320 002321 ACCCCTCAGC ACACTGAGGT GGAGCTGGGG CGAGGGGAGG GGGTGCGCTC TGGGTAACTG AAGGTGTGAA GGGCCCAGGG 002400 002401 CCTGTTTCTG GGCAGTGCAG GAAGTCCCAG CCCCATGCCT GTGGTGAGAT CCCCTGTAGG GCCCCCCCCA CCATGGACAC 002480 002481 TTCGGGGCCT CTACGGTCTT CCAAAGCTGT GTCCTCATTT CCACTGCAGC AGAGGGGCGT CCCCAGCTCC GTCAAACAGC 002560 002561 CCTTTCTGTT TCTGGAGTCC TACAAGTGGA GGCCCAAATC CGTTCCCATG TTGAGGCAAG GCCCTGGCTG TTCCTTCCTC 002640 002641 TCTGGAAACC GCCTTGAACT CTTCCTTTGG GACATGCCTC CTCGACCAGC CTTGAAGGGG TGCTCCTCTC TCACTACCTG 002720 002721 GAACCAAACA CCCCCTTCCT TTGTGTACAA GGGCAATAAA GAGTAgacct tcatcttctt ta |
Predicted Small Protein
Name | NONHSAT077455_smProtein_1967:2251 |
Length | 95 |
Molecular weight | 10350.7922 |
Aromaticity | 0.0744680851064 |
Instability index | 55.1872340426 |
Isoelectric point | 7.64959716797 |
Runs | 11 |
Runs residual | 0.0117946345976 |
Runs probability | 0.0223779929662 |
Amino acid sequence | MLFPILKRHGDQWPPNSFPTLPSRDERWPPLSLSPLCKHSPTNGCITAPHWDQGASLSGG TSVTCLCISVILRGSEVRAPCCGLWEDATKSHWI |
Secondary structure | LLLLHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEELLLLLLLLLLLLLL LEEEEEEEEEEEELLEEELLLLLLHHHHHHLLLL |
PRMN | - |
PiMo | - |