NONHSAT104506

From LncRNAWiki
Revision as of 09:32, 13 October 2014 by 73.162.128.239 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT104506

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2302 nt

Genomic location

chr5-:148804756..148812399

Exon number

4

Exons

148804756..148805222,148807548..148808282,148810298..148810891,148811894..148812399

Genome context

Sequence
000001 GCCAAGGGCT GGAACTTTAT TATTGTCACA GAGCACAGGA GAGACCGCTT GGGTCTCAAT GAAGGTTTGC TTTTCCTCTT 000080
000081 CTCCAGGGGA AGCTACTGCA AGAAGGCCCA CCAGCCAGGC TAGGTCAAAT GGGGTTGGGG CCACAACATG ATAGTTAAAC 000160
000161 CCATAAACAC AGACTTGATT CGATCCCAGC TTCACGACTT CTTAGCTGTG TGACCTTAGG TAAGTCTGTT AACCTCTCTC 000240
000241 AGCCTTGGCT TTGTGGAGTG GAGTGAAGAG CAGGGCCTGC TTCACTGGGG TGTTATCAGG ATGGAGGGGG ACAAGGCCTA 000320
000321 TGAAAGTGTT TAGCACAGCG CCTGGCAGAT CGTGACCAGT CACGGAGTGG AAGCTATCAT GATCAAATCT GATTTCTCCA 000400
000401 CGGTCAGGCC AGCCCTGTCA CTACGGATGA GGAAGAGGGG GTCTCATTTC ATAAATGCCT TCAATGCGGC CTGTGAGAAA 000480
000481 GACAGCTTGG GACACCTGTG TGAGCTTCCA ACGTCTTGTA GCAAGGTTAG CAATCACCAT GTGTAGGGGA AGAGCCATAG 000560
000561 TGTTCCTAGG GTGGGTAGAG ATGCCACAAG AGGGCGTTCT GAGTTTTCAT CTTCTCTACC TTGAAAAATT TTCCATTTGT 000640
000641 TCTCTGGCTG CATTCCAAAT CGAACGAAGA CTTAAGGTTT TTAGTTTACC TAACTGATTG AATACACTTT TAAAATGAAT 000720
000721 TCATGTGTGT TTACTAGTTT ATCAGTCATG TGGATGCAAT ACCGCAGCCC CTGTCGCAAG GCGCGTTGGG AAGTGGGTTG 000800
000801 AGGGTGTGGT GGAGACAAGA AACGCATGCC TGATGGTGTC CTGGTTCAAC CGCTGCTCAG CCGGGTGGCC TTGGACAAAT 000880
000881 TTCCCAAGAG TACGGCAGTG CTGAAGTTCC CACATCCAGC CTCACAGGGA TGTTATGAAA TAGACACGAT GGAAAGAAAA 000960
000961 GCAACGCAAA GGTTTGGAAC ATGGTTCATA AGCCCTCTTA CCTCCAGGGA CAGCCTTCTT CTTGAACCCT CATCCTGTGA 001040
001041 GCCAGCCGAG GCCCCATTGG GGGGCAACTG TGGGGTGGGA AGGAGGCAAA TCCAGCTGTG TCCTTTTCTT GTCAAGAACA 001120
001121 GCTTAATTTA GAAGGAGGAC ATTTAGTGAG TACAATTAAC AGGTTTTTAA TATATTCACA AAGTTGTGCA AACAATGGCA 001200
001201 CAATATATTT TAGGTTATTT CACCATCCAA AAAAGAAGCT CCTTATCCTT AGACAACCCC TAGTCCTGGG CAGACCAGTT 001280
001281 TCTATCTCTA TAGATCTGTC TATATATTTT CTGGATATTT CAATACATGG AATTATTTAA TATGTTGACC TACCTTTTGA 001360
001361 TGCCATGCCC CACCTTTATG CTTGGCGCAT TCCAGCCTAA CAGCATCATT CATGGTACTT AACATTTTAT ATCATCGAGC 001440
001441 AATCAATTGT CTCCAACCTA TCTTTCTTCT GCCACTCCTC CTCTCTTCCC AGCCATCTTC CCATAATGAT TTTTCAAGAT 001520
001521 GCAAATATGC TCATATCTTA CTCAAGTTTA ATATCCCAAA AGGGCTCCCC ATTGCCCTCA GGCTGAATTC TGAAGCCCTT 001600
001601 CCCAAAGCCT GCGAGGGTCT GCCGCATCTA GCCCCAGTGA CCTCTTCCTC TTGGGCTACA GCTCATAGAT GTCCTTCCAT 001680
001681 TCTCCTAGGG AGCCCTGTGC CCACCCACTT CGGGCTCCCA GGGACTGTGC TGCTCCCCGT CACTCTCCCT GCCCATCTCT 001760
001761 TCCTCCTGTG CTAGGTCTCT AATCAAGTGG CCACTCTGGG AAACCCTCCT TGACTTTTTT TTTTTTTTGA GACAGTTACT 001840
001841 GTATTTATGG TTACCTTTAT TTCCTAATTA GGCACAGTGT TAGAGTTTGC TATTTACAGT AGCTATTTCT ATGTGTAATA 001920
001921 AAAAGGACTC ATCCTACATT TAAAAATATT ATAATCATTT GCAGACATGG AAGAAATAAA ATAGGGGGCA TCTGAATGAC 002000
002001 TGAGTTTGGA AAACAGAGTC CGATACCATT TAATCATCAG AATGGCTGGT GCTGCTGGCA AGGGAATGTT ATTGCTCCTA 002080
002081 CATGGAGGAC CAGGAAGGGG ATTGTTCCAG GGTCACAGGG CCTGAGCTTG GACCAGAGGA GTTGAAGACC ATTTCCACCA 002160
002161 AGGCCATTTC CATTCCAAGA TGTAGGCTAA GATTATTGCA GCAAAGATAG CATCTCCCCT AGGTTTAGAA ACGAGAACTA 002240
002241 GATGGGAGGT AGTCCCATGC TTCTGAAGGA GAAACTGATG CAGGGAGAAG GGCTGAGGCA CA
[back to top]

Predicted Small Protein

Name NONHSAT104506_smProtein_2081:2209
Length 43
Molecular weight 4755.4154
Aromaticity 0.0
Instability index 47.9452380952
Isoelectric point 6.12921142578
Runs 8
Runs residual 0.0143158529234
Runs probability 0.0130608549726
Amino acid sequence MEDQEGDCSRVTGPELGPEELKTISTKAISIPRCRLRLLQQR
Secondary structure LLLLLLLLLLLLLLLLLLHHHHEELLLLEEELHHHHHHHHLL
PRMN -
PiMo -