NONHSAT104640

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT104640

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3914 nt

Genomic location

chr5+:151187002..151190915

Exon number

1

Exons

151187002..151190915

Genome context

Sequence
000001 AAGGTTAACA TTACAGTTCT TAATTTCCTT TAGGGCAAAC AAGATAATTA AACTTGGGTT TTGTGAGTCT TTTTTTGATT 000080
000081 TGCAGATTAT ATATGGTAAC ACAATAATGG TGGTTTGTTT TTAAGTTTTT TCTCATCAGG TTTGATAATT TAATGCAAAC 000160
000161 TTCAAATCTG GATGTGAATA ATAATATTTT TATTATAGTA TAATCCAGGT GAGTTTATAG AATTTGTGTT TTGTGCTTAT 000240
000241 AAACTGTCAC CTTCTGATAC TTTTCTTCAT CCCTCTATTT GAAAAACCCT TGTAGAATTT AACGATTTAA TGGAAAATGT 000320
000321 TGCACTTTAT AGAAGGCCAT TTTAGAACTT ACAGGTAACC TTTTTGAAGA GCTTAGATTT GTAGACCACT GTTTATGCTG 000400
000401 AGTGACATTT CTTTTAAATG GTTGCATTTG TCAAATCTAT AAAGATGTTT TTTATATTGC AGTTTTCTTT TTGTGCTACT 000480
000481 TAAAGGAATC TTTGCAATGC TGCATATAGA TAATTGTTGA CCTTTTTAGT TCAGCAGTTT TTAAACTTGA AGTAACATCA 000560
000561 GCATTTATTT GAATATCAGG TTTTAGCTAA CTGCCTAATG TACCAAAAAA AAATTAGCAA TGTCTTATGT GGGATGAGGG 000640
000641 GTTAAGTTAA AGTTGCTGAT CAAGTAATGG CCGTGTGGCA CAAGATGATA ACTAAGAATT TCTGGTTCTA AGGTAGTAAT 000720
000721 GCCTTTTGGG ATTTATATTT GTTTAATGTT GAGATTCTGG GGACCATAGG TGGGCCTGTC AACTCTTAAC AGACTATAGT 000800
000801 AAAGGAGAGA TGGTGGCACA TGTGAGATAA AACTTGTTTA TATTTACATT CTTATTAGTG GATAGATATC ACCTCAGTAC 000880
000881 AACACTGAAA TTAAACTGCC TTGTTCATGC TTTCATGTCT CAAATCAAGG CCTAAATGAG TAAAAAGATG ATTACAGATT 000960
000961 ACCTAAAACC CTTAACCAGT TTTGGTTTTT GATTATGCAT ATGTGTTGGC TTGCAATTAG GTTTTTAGTT TCTGTTTATG 001040
001041 TGACTTGTTT GAAAACATTG GATTCGTCTT CTCTCCACAG TTTCTACTTG AACCTAGTAG CTTATTTTAA TTCCCTGTAA 001120
001121 GAGGAAAATA ATATAGGGAA TCTGTTCAAC TATTCCTTTA ATAAATCATG TGACTTGGCC AATTACAGAA ATTCCTAAGT 001200
001201 GTAGTATTTT GAAATGTGGC CAGTGTCCCA GATTTGTAAG GTACAGTGTG CATACAGTGT GTCTTAGGAT TTTTTTAAGT 001280
001281 AAATTAAGGA TGTTTACCAG AAATTATTGA TTTACTGAAC CAAGTATTTA TTTTCAGAAG CCCACTTTTG GGGAAGGTTG 001360
001361 CCTATATTTT TGATAGTAAT TAGATGGAAG ATTAAATCCT GTTTAACCTG GATAGAAACA GTTTTAACTA TTGCTGAAGT 001440
001441 TAAAATCACT TTGGGGTGGG GTGGGGTGGC TCATGCCTGT AATCCCAGTG CTGTGGGAGG CTGAGGCCAG AGGATTGCTC 001520
001521 GAGGCCAGGA ATTTGAGACC AGCTTGGGCA ACATAGCAAG ACCCTGTCTC TACAGATAAT TGAAAAGTGA GCCAGATGTG 001600
001601 GTGGCGCATT CCTATAGTCT CCGTCTCTCA GGAGGCTGAG GCAGGAGATT GCTTGAGCCC AGGAGTTGGA GGCTGCAGTG 001680
001681 AGTTATGATC ATACCACTGC ACTCTAACCT GGGTGACAGA GTGAGACCCT GTCTCTAAAA AACAAAAAAT TAGAAAACAA 001760
001761 CAAAAACCAC TTCGGTTACT CACTGTCCTC ATGCTTTGAT GTCAGTTGTT CTCCTAAATT TTAAAATTTT GTTATGAAGA 001840
001841 TTGGATGTAC ACTGATTTGG CCCTTTAAAT GACATTATAC CAAGAAGTTG GTATAAGGGA GTAGGAGATG AGAAAACTTT 001920
001921 TTGAAAAATC ATTTGGTGCA TGCTAAGGTA GCTTGTAGGA CATGTGGTTT TAAAAAATTC ATGGATTTTG AAGAAGGATA 002000
002001 GGGTGGAAGT AAAATTTAGC TGATAGCATA GGGATCATTT GTGATTTATA TAGAAAATAA TTATATTTTT GAGTGAGAAG 002080
002081 CATCAGACTT AAATTTTTTT CTTCTATTTT GGTTATTACC AAAAGGAACA GAGAAACTCT CAGAATTCTT TGAATCATAG 002160
002161 AATGTTAGTG CTGGAAAGGA CTAGGAAGTG ACTTGTACAA CCCCTTCATT TTACAAAGGA TCAGAGAGAA TTGGTTAGTA 002240
002241 GAGTCCCAAA TCTGCTTTTA GAAGTAATAT GGTGATCATC AGTTTAGATT CACTGTAGGA AGGGCAGCCC TGTTAAAGTT 002320
002321 TGTCAGGAGA AAAAGGGAAG GTATCACTTT TTGTATGTTC ACCCAGTTGC TTCTGTAGTT TTCATACCCC TGTTTTCTCA 002400
002401 ATTTTCTTAG AACTGTCTTT AATGGCCCAG CTCTACCAGG GCTTGTTGTC TAAGGACATT AACTTGTGCT CCCCTCAGGG 002480
002481 ATGGGTTTAC TACTAGCTGT CAGAAAGCTA TTGGGTATCC TAATGTGTTA ATAGCTGAAA CTCAGCTGTA ATTTCTCCTA 002560
002561 AATACTTCAG CATTTTGCAT TCTGTACATT GTGGTGCTTT TTCCACCTTG TATTGTTGTA ACTGTAAGCT CCTAGGGGGC 002640
002641 AGCAATTTGG TCTTAGGCGT GTACCCTGTT TAGTGCCTGG CAATGCCATG TTTATATCAA GGTCTTAATA TTACTTTTGA 002720
002721 GTTATTTCTC CCACTCTTCA TGGAAGTGAT GCTCCAGCCT TGCTAAAACA CTGAGGGTCC TCCCGATAAG CCAGGCATTG 002800
002801 TGATTCCTTG GCTTCAAGTG CCTTCTGTCT TCCCCGAAGG TCCACTGAGA TCTACAATCC CCCCTTTCCT CTGATCTCTT 002880
002881 GCCATGTAAG TAATTTTTTA AAAGATCAGT ACAAGAGCTA TATTTTTTCC TAAGAAAAAA TTTCAACAGG AATGGGGAGT 002960
002961 AGCCCCGTTT TGGGGCTGAT CTGTCCAGAA TTTGGAGTGA GGAACAAATC CATTCTCATC TACTTTCCAC ATTTTCCCTC 003040
003041 TTGTTTGAGG TCCTGTTCCA ACCTTCATTT CTGAAACTGT TCTAGAGCAC TTTGTCTTTC TCGTAGTTCA TAACTTACCC 003120
003121 CTTCAGTCTA GAATTAGAAT TACATTATCT GTTTTACTAC TTTACTAGAC TGTAAGCTCC TAGAAGATAA GGACTAGGGA 003200
003201 GTTCATCTCT GTATTCCACC AGAAGGTACA GTGACTCATA ACTAGAGTCT TTAGATGAAA CTTACTGAGT TGAATAACTT 003280
003281 AATATATTTC TGTTTTCATT CCCAAGGGAG GCCATGTCTG GAGATAGACC TTGAATTTAA TAAATTTTAG GCACTATACC 003360
003361 ATTTCAGTGG AGAAAATTGT TGGGAAATTT GGGGGGATGG ATATATAAGG GGGAGGAAGT CACTGGCCAG TTTGAGGTGC 003440
003441 TTCCATTGGT CTGGGTAACT AGCCATTTCT TCCTGATTGT GCCTAGTATA TCCCAGACAG TTTGTTTCTA TGCAGAAGAA 003520
003521 TTTTATATGA AATTTTCATT TCTTTGCAAA AACTTGTTCC TTCTTTCAGT TCATGACATC ATCCATGCTA AAGTCTGAGT 003600
003601 CATCTGCTTC CATTTTTGTT ATTCCCCACA TCCAGTCTTC AGCTAAGTCC TGTCAGTTCT ACCTCAAGTC TTTCCCGTCT 003680
003681 TTCTTCCTCA CCTATGTAAT TTCAGTAGTC TCTCAGCTTC ACTTAACCTC TTACTCCAGC CTACTTTATA CACAATGTTA 003760
003761 GATTCATCTT ACTGAAACAT AGTTCTGACC ATGTATTCCA TGTATGTGTT CTCTCTCCCC TATTAGACTG TAAGCTCCTT 003840
003841 ATGGGCAGGA TCTGTGTCTG AGTCATCTTT GTATCTTGCC TAGCACCTAT CAATAAATAC TTCTTGAATG AACA
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Predicted Small Protein

Name NONHSAT104640_smProtein_3572:3760
Length 63
Molecular weight 6950.9774
Aromaticity 0.145161290323
Instability index 52.5856451613
Isoelectric point 8.71185302734
Runs 13
Runs residual 0.0560368663594
Runs probability 0.0556982321688
Amino acid sequence MTSSMLKSESSASIFVIPHIQSSAKSCQFYLKSFPSFFLTYVISVVSQLHLTSYSSLLYT
QC
Secondary structure LLHHHLLLLLLLEEEEELLLLLLHHHHHHHHHHLLLEEEEEEEEEHHHHEEEELLLEEEE
EL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLL
LL
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