NONHSAT118887
Revision as of 06:03, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT118887 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2430 nt |
Genomic location |
chr7+:5013616..5037800 |
Exon number |
8 |
Exons |
5013616..5013792,5015932..5016067,5023302..5023404,5024541..5024706,5026198..5026262,5028694..5028808,5035106..5035213,5036241..5037800 |
Genome context |
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Sequence |
000001 GTTAGTCGGG AGGGGGCGCT GTACGCGCGC TGTACGCTTG CGCGAGGTGA CGCCGGGGCA GGGCCGGAAG GAATGCAGCG 000080
000081 GCTGCCACGG AGCTCGTAGC TGCAGCTTTG GAGGAGTAAG CGGCGTGGTA GCGAAGGTCG CCGAACCCGC CTGGCTAGCC 000160 000161 GGCGAGTTGA GTGGCGACTC TTTTGAAACA GATGGTCACC ATGTTTAGAT ATTAGCAGTC CCGTATGTGC ATGTCTGCAT 000240 000241 TTGAAAATGG AAGAGGGAAA CAACAATGAA GAGGTAATTC ACTTGAACAA CTTTCACTGC CATCGGGGAC AAGACTTTGT 000320 000321 AATTTTCTTC TGGAAAACCC AGATTATCCA AAGAGAGAAG ACAGAATCAT TATAAATCCC AGTAGCAGTC TGCTGGCCAG 000400 000401 CCAAGATGAG ACAAAGTTGC CTAAAATAAG ACTTTTTTGA CTATTCTAAA TTGACTCCTC TTGACCAGCA CTGCTTCATC 000480 000481 CAAGCTGCTG ACCTCCTCAT GGCCGACTTC AAAGTGCTCA GTAGTCAGGA CATCATGTGG GCCCTGCACG AGCTCAAAGG 000560 000561 ACACTATGCA ATCACCCGAA AGGACTTTGA GAGTCATCAG CATATGGAAA ATCTCACCAG CCAGGATGAG GTACCCAGAG 000640 000641 ATACCAGGCC TTTTCTGATG CCATTAAAAA ATGGCAGGAG CTATCACCAG AAACCAGTGG AAAAAGGAAA AAGAGAAAAG 000720 000721 AAATGAACCA GTATTCTTAA ATTGATTTCA AGTTTGAACA AGGTACTGGG CTGCTGGGGG ATCCCAAGTG AGCAGAGTCT 000800 000801 GTTTTCTACC CTCGAGGAGC TCAGAGAAAA GGAAATAGAT AATTACTGTG TGATGAGACT CCAGACAGAG GGGTTGGCAT 000880 000881 CTGCACATCC TTCCTGGGCA TCTCGTGGGC ACTGCTCGAT TACCACCAGG CCTTGCACAC CTGCCTCCCC TCCAAGCCCC 000960 000961 TCCTGGGCCT GGGCTCCTCT GTGATCTACG TCCTGTGGAA CCTGCTGCTA CTGTGGCCCC GAGTCCTAGC TGTGGCCCTG 001040 001041 TTCTCAGCCC TCTTCCCCAG TATGTAGCCC TGCATTTCCT GGGCCTGTGG CTGGTACTGC TGCTCTGGGT TTGGCTTCAA 001120 001121 GGCACAGACT TCATGCTGGA CCCCAGTTCC GAGTATCCTC TATTTCTCCT GGTTCAACGT GGCTGAGGGC CACACCCGAG 001200 001201 GCCGGGCCAC CATCCACTTG GCTTTCCTCC TGAGTGACAG CATTCTCCTG GTGGCCACCT GGGTGACTTA CAGCTCCTGG 001280 001281 CTGCCCAGCA GGATTCCACT GCAGCTGTGG CTGCCTGTAG GAGGCGGATG CTTCTTTCTG GGCCTGGCTC TGTGGCTTGT 001360 001361 GTGCTACTGC TGGCTGCACC CTAGCTGATG CTGGGAGCCC AACCCTGACC AGGTGGACAG GACCCAGAGT CTACTTTCCT 001440 001441 CAGAGGGGTA TCAGCTGCCT CAGACCCAGT TAGCACAGAA CTTTTTTCCC AAGGGTAAGG CTGAGGCTGC TTCGCCAGTG 001520 001521 AAGGGAGAGG TGAACGGCGT CCTTTGAAGC AGGATCAGAC CCAGCCAGCA GAGATGGAGA GTGACTGCTG GCAGAAGGCA 001600 001601 GGCGAGGATA AGCTAACGAT GCTGCTGTGG CCTCCATGCA CTCAGCAAGA GTGGGATGCC TCTGCTGGGC CGTGCACCAG 001680 001681 GGATGGTGCT GAGTGGGGCA GAGGCCTGCC TTCAAGGAGT TCACAGTGAA CAAGATGAGA AGGGCTGGGC CCTGCAGGGT 001760 001761 CAAGAGCCCC AATTACGTAC AAGACACTTT GGGAGGAAAG ACGACTACCT TTTCTTTTCC CCCTGCCATT GGTATAGCTG 001840 001841 GTGCCCCAAA ACTTTCACCT CCCTCCCTGG CCACCTCTAA AATGATTGGT ATAGGGGCTT CCCCACCCCT TAGCTCCCCT 001920 001921 ATCCTGGGCT AGAAGGCCAC AGGGACTGTC CTCTAGAATT CTTCCTCCCC TCCCCCACAC CATTCATTCA ATTCGTGAAA 002000 002001 CAAATCTTCA CCGAGAGCAG TTTATGTGCT AGGAACATCA TTCTATCCTT GCAACCTGGA ACAAGACCAG CTACCACCTT 002080 002081 AGCTTCATCC CCTACTTGCA CCAACCAGTC CCGGGTTAGA TCTCAAATGC CGGAAGTCAG GGATGCCCAA CTCTGGGCAG 002160 002161 CCCCAGTCAG AACCTCTGGG ATCTCAGTGA AGCTGGCCTG GCCTCTGCTC TTGCTCTCAA GGGGCTGCTT TTCAACCAAG 002240 002241 AGCCTTGTGA GCCTGGTCTG AGCCTTGCAC AGCCACTGAG TATTTTTTAT TCCTTAGCCA GTGTACCTCC TACCTCAGAG 002320 002321 TCTATGTGAG AGGAAGAGAA TGTGTGTCCC TGTGGGTCTC TGCAAGTGAC AGATGTGTTG TTTTTAACAG TATTATTAGG 002400 002401 TTATGATTAA AGCCTCATGA AATCCTCTAA |
Predicted Small Protein
Name | NONHSAT118887_smProtein_1655:1879 |
Length | 75 |
Molecular weight | 8402.4802 |
Aromaticity | 0.121621621622 |
Instability index | 68.327027027 |
Isoelectric point | 6.88580322266 |
Runs | 11 |
Runs residual | 0.00599868160844 |
Runs probability | 0.0485860191742 |
Amino acid sequence | MPLLGRAPGMVLSGAEACLQGVHSEQDEKGWALQGQEPQLRTRHFGRKDDYLFFSPCHWY SWCPKTFTSLPGHL |
Secondary structure | LLLLLLLLLLLLLHHHHHHHLLLLHHHHLLLLLLLLLLLLLHHHLLLLLLEEEELLLLLL EELLLLLLLLLLLL |
PRMN | - |
PiMo | - |