NONHSAT124692
Revision as of 08:54, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT124692 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1394 nt |
Genomic location |
chr8+:1919296..1920689 |
Exon number |
1 |
Exons |
1919296..1920689 |
Genome context |
|
Sequence |
000001 AATTTTTTAA TGAACCAGTG AGTGTTGTTT CAAAGCCAAC ACATATATTC TAATTATTTC TTCATGCCAA GAAGCTGGAA 000080
000081 GTACTTTATA GCAATTGGCT CCATTCCTGA CAGTTATTGG GATTTAACAG CTTTATTGGC TGGGGGAGGA ACACATGAAC 000160 000161 TCCTAAGGGC TAATACAAGC ATTTGGGAAA TTATCTGTTG TCTGGCGTCA GCACTGGAAC AGGGCAGCAG AGCTGGAGAG 000240 000241 TAAGAAGCAG AGCTGGAGAG GAAGAAGTGT TTGCTAAGTC ACCGCGCAGG AGGAGACAGA ATCAGAGGTG ACGAATGTAA 000320 000321 GTCCACCCAT TGGCTTAAGA TCCAGTATCC TGAGTGAGTT GCACAGATCC TCTCCTTCAG TCCTCTCAGG TAGGTGCAGT 000400 000401 GGTGTCTCCc tggagcacag agaggccaag tatctggctc caaatcacaa gacttgcaga gggtaaggct ggtgtctaag 000480 000481 gtcccatcag ttgaactcca aagCAGGCTG TCTAGAAATT GGGTTCAGAG ACCTCCCAGC CTGGAACCCA GTTTGATGGA 000560 000561 GTCCCGCATT CAGGGGCCAG TAAACCACTG TACCCTGGAC AACTCCATAA GCTTCGGTTA TATTTTTAGG GCGGTTTTGC 000640 000641 ATGTTGAAAT ATTTGCATGC TTCGAGTCTA CCATGCATGA TCAGGCTGTC CCTGACCAGG GGAAAATTTA CATAGTAAAA 000720 000721 TAGTATTACC CTTGAAATAG ATTTAAGATA GGTCCTCCTT TTTCTTGACA GTATTACAAC CCAGTTCAAT TTCAGGAACT 000800 000801 CTAGAGGTCC CTGCAGTTAT GAAGAACTAA TTAAAGGCAT GAAATGTTCC TCTGCAAGTT TCATTGACCA TATTGGGCCT 000880 000881 ACAGTCCATT TCCAAATAAA TATCTAAGGT AAGAAAAATA TGGGACTCCC CACAGACTAC TTATCTACCA GATGGTGTGG 000960 000961 GGTTTGGATG GATGTTTTCA GTTACTTCAG CAattttttc attaattcag tatttattga gaacctaatg tatgccaagc 001040 001041 ttgtaaaatg cagtgggggg tatgacctat tcccaggtct ctggactctg gcagaatggt agagaagaTG CTGTCGGGCT 001120 001121 TGCATGTTCA GAACACCGTG TCTTAGGTGA CCTCCCGGGC CTTTGGAGGC CCAACCCCAG GGTGGCGGGA TAGCCAGGTG 001200 001201 AGGCTTTGTT TGGCCTGTTC ACGTTTCTCT GGAAAAGAAT GGGGGTAGTT Aggccaggcg cggtggctca tgcctgtaat 001280 001281 cccagcactt tgggaggcca agacaggtgg atcacttgag gtcaggagat cgagaccagc ctggccaatg tacagtgaaa 001360 001361 ccctgtctct actaaaaata caaaatttag ctgg |
Predicted Small Protein
Name | NONHSAT124692_smProtein_1061:1192 |
Length | 44 |
Molecular weight | 4694.2306 |
Aromaticity | 0.0697674418605 |
Instability index | 41.3255813953 |
Isoelectric point | 6.51568603516 |
Runs | 8 |
Runs residual | 0.0287431408414 |
Runs probability | 0.0285947712419 |
Amino acid sequence | MTYSQVSGLWQNGREDAVGLACSEHRVLGDLPGLWRPNPRVAG |
Secondary structure | LLEEEELLLLLLLLHHHHEELLLLLEELLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |