NONHSAT130449
Revision as of 11:14, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT130449 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1381 nt |
Genomic location |
chr9+:22767106..22768486 |
Exon number |
1 |
Exons |
22767106..22768486 |
Genome context |
|
Sequence |
000001 gtttgtttgg tttgtgtttt gtttgtttgt ttgtttgtGT CTTCCTGAGT TACATTTTCT GTCTACAGTT GGCTGGCTAT 000080
000081 GCAGTGAAGC TCCATATGTC CCACATTCAT TCTTCAGAAT AACTTGGGCA AGTTCTCATG GTGAAAGTAG AGGTGCAAAG 000160 000161 GTAAACAAGT CCAATTATCT AAGTATGTGC GAAGTCTCTA TTTGTGTCTT GTTTACAAAC AGCACGTGGC CAAAGCTATG 000240 000241 AATCACAACA TTAAGGGCTG AGTAAAATTT CCTGCCCAGA CTTGGACAGT ACTTGAAACT TGTATACGAA AAGAACAGAT 000320 000321 ATAAAGAGGG GAGAAAGAAT TTGGGCTGAA ATTCAATCTA TCACActttc ccaacctaat agctcatatt tctttttgtt 000400 000401 tgatgagtta gttcatcagt acaatgctga taggaagact gatagttaac atttatgtcg tgtttctaTA TGTAATAGGA 000480 000481 AGGAtctgga gtacattttt gatgaatata aaattttaag tttatggttt tcttctttca gctcttcaag cattttttcc 000560 000561 tactgtctAA TGAACAGTCT GTATTAATTT TAGTTTTGTT CCTGTCTTTA TAAGTTTACC TGTTCTCTCt ttttcaaaat 000640 000641 aaactgttaa ttttagagcc attttagatt tacagaaaaa ttgtgaagag agtacagagt tgccattacc cccataaatg 000720 000721 caggtttttc ctgttttaac atcttacatt agtgtggtaa atttgttaca attaattagg caatatttat acattagtat 000800 000801 taaatacatc catattctat tcagattttg ttcataatgt tcttttttgt tccaggattt catctgaata ccaaattact 000880 000881 tttggtcatc atgtcttctt aagctcctct tggctgtgac actctcagac aagaattttg ataatcatgt ttttataacc 000960 000961 ttgacagttt tctagagtac agtcaggtat ttcccacaat gagagttgta tgatgctttc ctataattag actgggatga 001040 001041 tggggataca tggagggaag gcacagaagt aaggcatgga ggtaaatcat cgtggaaaag ctattttatc acagtatgcc 001120 001121 aagtgtacat aacattgtag atgtaaacca tgattacctg gatgaggtag caattgcaga ttttcttact gtaaagttat 001200 001201 tctttttcct cccttgttat atagcaccat ttggaagcaa gtcactacgc ataattcaca attgagtaat aaagatttat 001280 001281 gcttcacctc tttgaaggta gagtatctac atatattatt tgacattcat ctctatttgt tcagtcattt attcatatca 001360 001361 atatggattc atggataatt a |
Predicted Small Protein
Name | NONHSAT130449_smProtein_1115:1264 |
Length | 50 |
Molecular weight | 5621.4866 |
Aromaticity | 0.142857142857 |
Instability index | 47.6367346939 |
Isoelectric point | 5.73333740234 |
Runs | 10 |
Runs residual | 0.0420297848869 |
Runs probability | 0.0555643879174 |
Amino acid sequence | MPSVHNIVDVNHDYLDEVAIADFLTVKLFFFLPCYIAPFGSKSLRIIHN |
Secondary structure | LLLLLEEELLLLLHHHHHHHHHHHHHHHEEELLLEELLLLLLLEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLL |
PiMo | ooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiii |