ENST00000429328.2

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Annotated Information

Name

PDZK1IP1-AS1

Characteristics

Spliced, two exon 661nt transcript.

Transcribed bidirectionally with CYP4A22-AS1.

LincRNA catalogue from deep RNA sequencing suggests variation in transcript length and also potential alternative splicing ((Cabili 2011)).

Expressed downstream of TAL1 and PDZK1IP1 on the opposite strand.

In-vitro translation showed no sign of protein product.

Function

PDZK1IP1-AS1 expression appears to stimulate CMPK1 gene expression (in Jurkat cells). A gene located over 150 kb 3’ of PDZK1IP1-AS1 on the same strand.

Expression

Expressed in Jurkat cells, but not in MCF7 cells (unlike CYP4A22-AS1).

Conservation

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Misc

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Transcriptomic Nomeclature

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Regulation

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID	ENST00000429328.2
Source	Gencode19
Same with	lnc-CYP4A22-2:2
Classification	intergenic
Length	661 nt
Genomic location	chr1+:47644922..47646011
Exon number	2
Exons	47644922..47645110,47645540..47646011
Genome context
Sequence	000001 GCCGCGCCTG AAGCTCAACT TCCGAGGCTC TCATCAATCT ACGCTTCCTT TGGAGCGTGC AGCCACCAGG TGGCAGCCGA 000080 000081 GGCCACGGGC AGACAGAAAA GCTCCCGAAA CTGAAGGACT GCCAGGCAGC AGAGTTCCGG AGGGCTCCCA GGACCTTCAA 000160 000161 CCAGAAAGAG ACAGAGCATA TGCGCATATC CCTGCAAGGA ATGTACTATA GAGCCAATTT TACCGGCAAA GGAATGGAAG 000240 000241 ATCTGAAAGG CTAGGCGATC CCACAAGCAT CGAGGAGCAG GCTGGAATTT GAACCAATCG GCATGATTCC CAAGCTCAAG 000320 000321 CTTTTGGCCA CCCCTGCACT GCCAGGGACA AAAAAAAAAA AAAAAAAAAA CCCTGGGAGG AGAGCCAAGC TAGGGAGTCA 000400 000401 AGACCCTCCA GCCAGGTCTG GATGGGAGGC AGGTGCCTCC ACCCTGGTCC CAGAGCAAGT TCTGCTGGCT TCAGCCACCT 000480 000481 GACTTCCCTG TGAAGGTGGG TAGAGGCCAG AGCAGACTGT GTGTGATTCT GGCCCCAGCC CCAGCACCTC TACCCCCACC 000560 000561 TTTACTACCC CTAGGCTGCG GGAAGAGGCT TTGCCCAGCA ATAGTCCTGA TCTAATGGAT CCTTGAAGCA CAATAAACAG 000640 000641 ATAGTATTTC TGCATGTGTC A

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