NONHSAT139762
Revision as of 02:56, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT139762 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2410 nt |
Genomic location |
chrY+:27535139..27537958 |
Exon number |
2 |
Exons |
27535139..27537421,27537832..27537958 |
Genome context |
|
Sequence |
000001 TACTCAGCCC CCAGGCCTGC GTTCAGTGAG GCCTCCCGTG GCGTCAGCAT GTTCGTGTGG AGCAATGTGG AAGGTCACTC 000080
000081 TGTGGCCATG TTCCCCTGGT ACTCCATCCC CTTCCTGAAC CCTCCCTGCA GCCACACGAG GCCCAGCAAC CTGCCAGTCA 000160 000161 CTCAGTGGCC TCCAACCAGA GAAAACAACC TGCCAAGTTG GCAGCTGTTG CTCACGAGCA TCCACCAGGT GGGACAGGGA 000240 000241 GTGTTGACCC TGGGCGGCCC CCTGGAGCCA CCTGCCCTGA AAGCCCAGGG CCCGCAACCC CACACACTTT GGGGGTGGTG 000320 000321 GAACCTGGTA AAAGCTCATC TCCCACCATG GAGGAGGAGC CCTGGGCCCC TCAGGGGAGT CCCTGCTGGA CAGTGAGACA 000400 000401 GAGAATGACC ATGATGATGC TTTCCTCTCC ATCATGTCTC CTGACACCCA GTTGCCTCTA CCACTCAGAT GATGTCAGGC 000480 000481 CCAGTTCCTC AGTGCCCTGC ACAAGGAACA GGGCTCATCT TCTGAGAAGG ATGGACGCAG CCCCAACAAA TGGGACAAGG 000560 000561 ACCACATCCG GTGTCCCATG AGTGGCGGTC ATGATCTTCA GCAAGCGGCA CCAGGCCCTG GCAGGGCACA CCAGGGTCAC 000640 000641 CCCAACCAGG ATAACTGGAC CGTCAGCCAG ATGCTGAGCA AGTGGTGGTA CACCCTGGGG CCCAATGAGA GGCAGAAATA 000720 000721 CCATGAACTG GCCTTCCAGG TGAAGGTGGC CCACTTGCAA TAAGGACTGA AAGAAGTTCA GCTCAGAGGC CAAGCCCACA 000800 000801 AGCCAGGGGC TAGCAGGAGT GTAACAAAGG CTCGTGGGAG TGGAGCATGT CAGAGACTGG CACTGCCACT GCCCCTGGGG 000880 000881 TGTCCTCTGA ACTCCTGTCA GTTGCAGCCC AAACACTCCA GAGCTCGGAT ACCAAGGAGC AGCTTCTGTG GGGCAGAATG 000960 000961 GCTGCACACA GTCAGGGAAC CTGGCTCAGC CTGGCCCAAG CCTTCTCCCA CAGGGGGGTA CACAGCCTGG ATGGCAGGGA 001040 001041 AATAGACCAT CAGGCACTAC AGGAACTGAC ACAGGTGGTA TCTGGCACTG CATCATACTC TGGCCCAAAG CCTTCTACTC 001120 001121 AGTATGGAGC TCCAGGCCAC TTTGCAGCCC CTGGTGAGGG AGGTGACCAG TGGGCAGCCC TGCTGCTGCC CACCTGAGCT 001200 001201 GGTCATTCCC AGCACATGGC CAGTGAGGAC ATAGCGAGTG ACAAGGAGCA CACGGTCATC CATGAGGAAT AGGGTGTGAT 001280 001281 GATGTCATTG CTGATGATGG CTTTAGCACC ACTGACACTG ATCTCAAGTT CAAGGAGTGG GTGACCGACT GAGAGTGGGG 001360 001361 ACAACTCTGG GGAGGAGCCA GAGGGCAACA AGGGCTTTAG TGGGAAGGTA TTTGCACCTG TCATTCCTTC CTCCTTTACT 001440 001441 CCTGCTGCCC CTTGCTGGAT CCTGAGCCCC CAGGGTCCCC CGATCCACCT GCAGCTTTTG GCAAAGTCTA TGGTCCCACC 001520 001521 CTGTCCTCCT CCTACACATA CTCGGATGCT TCCTCCTCAA TCTTGGCACC CACCTCCTTC TTACTGGGCC CAGGAGCCTT 001600 001601 CAAAGCCCAG GAGTCTGGTC AAGGCAGCAG AGCGGGCCCC CTACAGCCCC TACCCCTGGG GATGTGGACC CAGGGATGCC 001680 001681 TTCCAAGGTG ACCTGTTTCC TCCCAATGGA TCCTTCCACC TTCTGGTGCA AGAGACCTGA AAGTGTGGGT GACCTGGAGC 001760 001761 TACCAGGCTC CTCAGTCATC AGGGTCCCTC CCAACACTAA GGCTTTCCTA GGCAGGAGCT GGGCTGAGCC ACCTGGGGGG 001840 001841 CAGAGCCTGA AGAGAAACTG ACTGGGCTTT TGGGGTCGGG GAAGAGGGAA CCCCACAGAC ATGGATCCCA CACTGGAGGA 001920 001921 CCCCACCACA CCCAAATGCA AGATGAGAAG ATGCTCCAGC TGCAGCCCAA AGCCCAACAC CCCCAAGTGT GCCATGTGTG 002000 002001 ATGGGGACAG CTTCCCCTTT GCCTGTACAG TTGGAGAAGC CAAGGACAGG CTCAGGGAAC TGGAGACCGA GTAGGCGCTG 002080 002081 TCCTCTTCAC TGCACGCGCC CTGGACCAGT GCCAGCCCTG ATCATGCAGC ATTTCCAGGC CCCCTTCTTC TTCCTGTCCA 002160 002161 CTAGGCCACA GCCGCCCTCC AGGCCCACTA TGTACACATC TTCCCCTCCA AGGTTTGTTC TGCCCCTGCC CTGACTCCCA 002240 002241 GCCCTGTGGG GGTCCTGACC ACACCTCACC TGGCTCAGAC TCTggcgcaa ccctggctgc cctgccactg cctctgcccC 002320 002321 AGAGTTGGGG CCTTGACAGC CTGGCTGGAA GGGGACACCC TAGCCTTGCC TCAACACCTG GGGGTCTCCA TAACTACCAC 002400 002401 AGGCAGGTAG |
Predicted Small Protein
Name | NONHSAT139762_smProtein_347:580 |
Length | 78 |
Molecular weight | 8578.764 |
Aromaticity | 0.038961038961 |
Instability index | 85.225974026 |
Isoelectric point | 8.52301025391 |
Runs | 8 |
Runs residual | 0.0321852060982 |
Runs probability | 0.0475181063416 |
Amino acid sequence | MEEEPWAPQGSPCWTVRQRMTMMMLSSPSCLLTPSCLYHSDDVRPSSSVPCTRNRAHLLR RMDAAPTNGTRTTSGVP |
Secondary structure | LLLLLLLLLLLLLLLHHHEEEEEEELLLLLLLLLLEEELLLLLLLLLLLLLLLLHHHHHH HHLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |