NONHSAT053755
Revision as of 22:17, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053755 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
804 nt |
Genomic location |
chr17-:40870024..40874827 |
Exon number |
3 |
Exons |
40870024..40870635,40872291..40872467,40874813..40874827 |
Genome context |
|
Sequence |
000001 TCCATGGTGA AGAAGAGATG ATCCCTGGAT CCGTTCTGAT TAGTGATGCT GTTTTTCTGG AGTTGGTCGA TGCCCTGAAT 000080
000081 CAGTACTCAG ATGAGGAGGA GGAAGGGCAC AATGACACCT CAGATGGAAA GCAGGATGAC AGCAAAGAAG ATCTGCCAGT 000160 000161 AACAAGAAAG AGAAAGCGAC ATGCTATTGA AGGTATCGAG AACTAACAGA GATGTCAGAC CCCAATGCAC TTCCCCCTCA 000240 000241 GTGCACACCC AACATCGATG GCCCCAATGC CAAGTCTGTG CAGCGGGAGC AATCTCTGCA CTCCTTCCAC ACACTTTTTT 000320 000321 GCCGGCGCTG CTTTAAATAC GACTGCTTCC TTCACCGTGA GTGGGGCTAC TCTGTTTGAA ATGCTCTCCT CTCTTCCATC 000400 000401 CCCAGCCACC ATTTCCTTCT CTTTGTTCTG GTTTCTCGTA TAGAGTTCCT GGCTTCTGTT CTAACGTTTT ACAAAGGGCC 000480 000481 AGTTCTATTT TCCCTTGCTC AATTATAGTG CAACATGCTT TGCATGATAG GGACAGACTA ACTAGCAACT TATCTGTCCC 000560 000561 TCAGTACCTC TTAGCTTTGA AAGCATTGTG TTGATGTCAG AAATGACTGA ATTTTGTGCA CCCTGATGGT AGCCGTTTAT 000640 000641 ATCGAATTCT AACTCCTACA ATAGCTCTCT AATTCACTTT TGTTTCTCCC CATCTTGTCA AGTGGATAGA CCACTGGCAA 000720 000721 CAAGACAGTT TTTGTTTTCC AGCTTTTCAT GCCACCCCTA ATGTATATAA ACGCAAGAAT AAAGAAATCA AGATTGAACC 000800 000801 AGAA |
Predicted Small Protein
Name | NONHSAT053755_smProtein_224:442 |
Length | 73 |
Molecular weight | 7571.6801 |
Aromaticity | 0.125 |
Instability index | 48.6194444444 |
Isoelectric point | 6.20391845703 |
Runs | 11 |
Runs residual | 0.0118613138686 |
Runs probability | 0.0305117952176 |
Amino acid sequence | MHFPLSAHPTSMAPMPSLCSGSNLCTPSTHFFAGAALNTTASFTVSGATLFEMLSSLPSP ATISFSLFWFLV |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHLLLLEEEELHHHHHHHHHHLLLL LLEEEEHHHEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLHHHHHH HHHHHHHHHHHH |
PiMo | oooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiTTTTTT TTTTTTTTTTTT |