NONHSAT121715

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT121715

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1197 nt

Genomic location

chr7+:79083373..79100002

Exon number

3

Exons

79083373..79084323,79088163..79088315,79099910..79100002

Genome context

Sequence
000001 TCGAGCCCAG TGCGGACCTT TCTTCAGCCT CTGTGCGACC GAGCCGCGCG CCAGGCTCCT GTGCGAGGAG GACGCGCTGA 000080
000081 CTCCCTCCGA CCTGGGCTCC GATGGAGCAG AAATAGCGGG ACCTGGACTT GTGGCGCGCC TGGTGCCACA TCTCGGGCTC 000160
000161 TGCGAGCGTC CTGGCGCGGG ATCCTGCCGT GAGAAGGAGT TGGGGCGGGG GACCCGGCGG GGCATTGCGG GAGAAGGCCT 000240
000241 GGGATCCCTG GGAGCCTTGT AGCGTGGGGG AGTTCACTGT GTAGAGAGGT TTCATGTCTT CATCTATATA GTCACTTATT 000320
000321 TGTCTTAAAG TTCTCGAAAT TCCCTCTTAG AGAAGGAGAA AGTTAGAGAA CTGGAGGCTG CGTACCCTGA TTACGCAGAA 000400
000401 GGGAAGCAGC CTCGCATTCC CCGGGGCAGG CCCCCGCCCG CGCGTCCCGC CAGTAGGGGA ATTTAGCGGA CGGCTGCGGT 000480
000481 TGTCTGGTGA AAGGCTATCC AAGGATAAGG GGCTTCACTT TTCCCAAGTA GGGGAAAGAG AAGGGGTCTA CAGGGCTAGG 000560
000561 GGTGGAGGGA GCGGATGCAG TGAGCAGCCT CCGCAGAGAA ATTGACAATT TAACCAGGGA CCTGCGGCAG AGACAAGGCG 000640
000641 GAGACACTCC CTTGCCCAGG AAAGCCGCCA GAGTCCGGCT TGTACCTGGG GAAGAATCCT TAAGACGGTC TGGCCCAACA 000720
000721 CTCCTTTGCT CACAGAGAAA GGGGAGAAGA CTCCCGAGGG TGAAAATGGT ACATTCGGAG CTGGAACTCA GCTCGCTGAC 000800
000801 CCCAAGCAGT GTTCCCTTCT TTTCGCCAGG TTTGCATCCA AGAGAGGGGA GGACAGGGGC AAAAGGATGC AGGGAGGCTG 000880
000881 CTGATTTCCA CTGAAGAGCT AATTTCCTGT GAGACATTAA CAGTGATTTA AGAAAAAGAT TCCTGTAACT GTAATGTCTT 000960
000961 ACAATAACAG AATGCAGGAG AGCACATATC AATGAAGAAA AGACAAAATG TACTTATCCA TGAAGCTGAG GTTAAGAAAC 001040
001041 CAGTGTCTTC AAGAGCCAGG GACAGCACTG GGTCTGTGCA GAGTTGAGAG ATGGTGATGA CATGtgacag agctccttgc 001120
001121 tgctcaaatt ttatgccaga taaaatattc accttctcgg actccctggc accaggcatg gccatgtaat gtaagtg
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Predicted Small Protein

Name NONHSAT121715_smProtein_1007:1096
Length 30
Molecular weight 3466.1338
Aromaticity 0.0689655172414
Instability index 75.2206896552
Isoelectric point 9.49444580078
Runs 6
Runs residual 0.0073275862069
Runs probability 0.0304863687217
Amino acid sequence MYLSMKLRLRNQCLQEPGTALGLCRVERW
Secondary structure LEEHHHHHHHHHHHLLLLLLLLLLEEELL
PRMN -
PiMo -