ENST00000559902.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000559902.1

Source

Gencode19

Same with

lnc-FOXB1-3:6,NONHSAT044220

Classification

antisense

Length

723 nt

Genomic location

chr15+:60802607..60840163

Exon number

4

Exons

60802607..60802732,60820779..60820926,60838464..60838665,60839917..60840163

Genome context

Sequence
000001 GTCACATCTC CCAAGAAGCA GTAATGTTCC AGCAATAAGA AAAGGACAGT TTTTTGTCTT TTGCATGGTG AGCCTTATAT 000080
000081 GAATTACATC AATTTTGTCA CCAATATCCA TCATCAGAAC ATTTTGATTC TACATAACAC ATTGCAAATG GTCACAACAA 000160
000161 TCAAGACTAT ATCCATAGAT GTCCCAGAAA TAATATCTGA CTATACAGAG CAGCATTACC AAGCCACCAA GAAGTCTGCC 000240
000241 TAGTAATGAC AATGATAACA ACAGCTAACA CTTAGGATTT GATTTAGGAC AAATTGTTAT TTGGATGGAT GCTTGTCTAT 000320
000321 TGAGAGAGTA ATTGTTAAAC TAAAGGAAAC TGGTCACAAA TACTTTAGCA GTGGCTATAA ATGACCAGTG GGCCAAGGAT 000400
000401 TTTGAGATCG TGAGAGACTT CTCCGGGAAT GTTGTCATTC ATTTCACTCC AGTGTGGCTC TTTTCCTCCA TCTGCGCTCA 000480
000481 CTTTTCTAGG AGAACTATGG CCACTATGGA GAATATGAAA ACATTGCTGA AGGAGGTGAA AGCCATTTCA GAAGAAGAGT 000560
000561 TATATATTAG CTTTTGGCAG TGACAGCGTT ATGGGCACGG ACATTCAGCC TTTCCAGTTG ACTGCTTTGA AGGGGCAATG 000640
000641 TTCACGTGGA AGTATACCTC CTAGTATGTT TGCTAAAATA AAATCAGCTT CATTACCTAA TAACATAAAT GACTTTGGGA 000720
000721 GAA
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Predicted Small Protein

Name ENST00000559902.1_smProtein_428:517
Length 30
Molecular weight 3310.9243
Aromaticity 0.172413793103
Instability index 56.2068965517
Isoelectric point 5.75079345703
Runs 5
Runs residual 0.0271551724138
Runs probability 0.0435435435435
Amino acid sequence MLSFISLQCGSFPPSALTFLGELWPLWRI
Secondary structure LLEEEELLLLLLLHHHHHHHHHHHHHHLL
PRMN -
PiMo -