ENST00000582838.1
Revision as of 07:25, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000582838.1 |
Source |
Gencode19 |
Same with |
lnc-GGCT-1:25,NONHSAT119893 |
Classification |
intergenic |
Length |
585 nt |
Genomic location |
chr7-:30589934..30591836 |
Exon number |
2 |
Exons |
30589934..30590397,30591716..30591836 |
Genome context |
|
Sequence |
000001 ATCATTTCCC TGAGCTCACT TTATCCTTTT CCTTCTTAAA GGCGACCATT TCATTAAGTT TTTAAGTGCC TGGTAATTGC 000080
000081 TTGGTTATGA CCGGTGTCTG CTCCATGGCA GCCTCTTCCT GAAGAAATGC TGAGGCAGTG TCACGCTGGT GTCTGTCCTC 000160 000161 CTTACAGAAT GCCTGAACAG TTCCATTGAC TCAAAGTGAA GATCAAAAGA ACCAAATGAC AGCAATAGCC AAGTGTAATC 000240 000241 ATCAGTAACC CTGTGTTCTA TCCACAGGTA AAAAACAATC ATCCTCTTCA TTATGGGTTT CAATTTTAAA TGTAATACAT 000320 000321 TTTTAGAAAT GCCTATTTCC TTTTATAATC TCTTTATATA ATCTAGGTTA TTCTGGCTCT TAGGTCTTCA TTTAGCTACT 000400 000401 GAAAAGATTT GATCTCAAAT CAATGATCTA ACCACCCATG ACCATCTCCC ACCTCTCTCC CCGTACACCC CCCAGCATGA 000480 000481 ATTCTGGGAA CTCAGGTAAA ATGCTTTCTG GAAACCTGCC TGTATTAGTC TGTTGTCAAG CTGCTAATAA ACACATACCC 000560 000561 GAAACTGGGT AGTTTATAAA GGAAA |
Predicted Small Protein
Name | ENST00000582838.1_smProtein_437:571 |
Length | 45 |
Molecular weight | 4577.2717 |
Aromaticity | 0.0 |
Instability index | 51.5409090909 |
Isoelectric point | 8.88751220703 |
Runs | 8 |
Runs residual | 0.0187165775401 |
Runs probability | 0.0434883412826 |
Amino acid sequence | MTISHLSPRTPPSMNSGNSGKMLSGNLPVLVCCQAANKHIPETG |
Secondary structure | LEEEELLLLLLLLLLLLLLLEEELLLLLEEEEEHHHLLLLLLLL |
PRMN | - |
PiMo | - |