NONHSAT003744

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT003744

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2840 nt

Genomic location

chr1+:66104459..66107298

Exon number

1

Exons

66104459..66107298

Genome context

Sequence
000001 AGAAATAGGT AAAGGGCTGA TAGCAACTCA TTACTTGATG TGGTACGAGA GCCTTAGTTC TATGCAAAGA TAAATGGAGA 000080
000081 AGCGTTTTTT TCATGGATAA TTTTACATGG CTTTAGAGAC ACAGAAACAG ATAAATTATT ACATGTATAA AAATTTTAGT 000160
000161 AAAATTGACA TTTTAAATAC ATGCTTATAG ATTATTGGTA TTTAATTGAA GGTACAGTAC AGAAGAGATA GAAAAATAAA 000240
000241 TTTTGCCCCA CTCTGAAATT GAAGACTGAC CTCTGAGCAT GTCCGCTGAG ACACAGTATT CTCCTGTGAT CTGGGACCCA 000320
000321 GAATAACAGG AAAGAGAAAC TGATAGATGT TTTCATCAGC CCAAGGATGT ATGTATCTTA CTTGAGTGAA TTCAACAGTC 000400
000401 CCAGGACCAC TGTAGTGCTG TAGGTCTGTG TAAAGAAATG TAGTGACAGC ACATTAACCT GAGATCATTG ATACCATCTT 000480
000481 GGTTCAGCCT CAGTTCCCCA GATAAGTGAA CAAATGAACA AAAATGCACT TCAGAAATAT TGAAATTCCA AGGCACTATT 000560
000561 TCATGGACAG TGCTGAACAA GTATAGTTTG GCCTATTGGT ATGTATAGAC TTAGATCATA TTTATTGTCA ATGGGCTTGA 000640
000641 ATTCTGATTT CCACTTTTGA AAGTTTATTT CACTATGTAT CATTACATTT TATTGGGACC TTGTGAAAAC TACCTGCCAT 000720
000721 GAAATACTGG ATTTTCACAT AATTTAGAAA AAATTTAGAA TGTTTTATGC CTCAGAATGG TCAGGAACTT CCCATTTCTT 000800
000801 CCCACAGCTT CTATAAAAAA AATTTAAAAG GAAGGAGGAG CTGAAATAGG GGCTATGGTC TTTTAAACTT ATAAATCTGG 000880
000881 AATTTTTAAT ATTTCATTTT AAGGCCTTAA ACCGAAACAC AAGCTACTAA TCAGTCTTTC TAAATCTGAC CTTCATTGAA 000960
000961 AGCAACTCAG AAATTAATAA TTTGTGCTGT GGCTTCAAGT TTAAATAGAT TGTTTGAAGA GAAATCATAT GTCAGGGTTT 001040
001041 GCAGGATTAC AGGATTTCTA ACTTAAACCC CCAAGAACAA TGAAAAAGTT GACGTACATG TCACTATGAA TAGGCACCTT 001120
001121 CTGTTGGATC TCTGTGTCCA TTTAGAGATG AGCTACAAGT TGACAAGAAA AATAGGAGCA GTTTTTTTTT TCTTTTTAAA 001200
001201 CCTAGTCACC AAATGGTAAA AGGACTTGGA TGAAATTCCA ATACCAGTGT GAGATTCTGG ATTTAGAATA AGGTTTTATA 001280
001281 ACCTTAGGCA TGTCATTCTT CTACTTCTCA TTTTTCCCTA ATAAAACTTA TTCTCTCTTC CATAATATCA TATATATGGT 001360
001361 CACATTACTT CAGGAATATT TATATTACCT CCTCCAAAAC TGAAAGAAAA TAAACTTTAG GCTGTAAGAG TTGAGAATTA 001440
001441 TGCATACAGG GCTCACAGGC GGAGTTGGAC AATATGCTGA TGGATCAAGA CATACTGCAA CCACAAAGTT CCATCTCACT 001520
001521 TAGATGTGGA TGAAAAAAGA TCTCTTGCTA AATTATTTTC TGTGACCTTA AAAGAAATTT GTTTCACTTT TCATCTTTCA 001600
001601 AGGGTCATCT TGATAGTTAC CTTAACAAAC CTTTCTCAGC TATTTATTAT TGAGAAAGCC CATTCTTAAA TTTTAAGTCA 001680
001681 CAAAATTATA GTTGTCCACT CTACTATGAC TGAAAGAAGC AGCATTCAAG AAAAAATTTA AACATAGTTA CCAAGAAATG 001760
001761 TGAAGAAGTA TTTATAAAAG GAAGCTACAT AAGTAGGTAA TTTTACTCTT TCTTAACCAG TTTAAAACAG TAAAGCACAC 001840
001841 CTGCATCTAA TCACAATGTT AGGCGAACAA CTTAAAACAT GATCAGCCTG TATGAGAACT GGGATATTGT TACATATTCA 001920
001921 GCCTGTATGA GAACTGGGAT ATTGTTGTTA CATGTATTTG TATAAACATT AGGAGATGAT TTCCATGGCt tttttttttt 002000
002001 tttttttagg aagtcttgct ctgttgccca gctggagtgc agtgatgtga tctcggctca ctgcaacccc tgcttcccag 002080
002081 gttcaagcga ttctcctgcc tcagcctccc cagtagctgg gattacgggc acaccaccat gcccagcttt tatttattta 002160
002161 tttatttatt ttggattttt agtagagatg gggttttgcc ctgttggcca ggctggtctt gaactcctga cctcaagtga 002240
002241 tccgccctca ttggcctccc aaagttctgg gattacaggt gtgagagctg ccgcgcctag ccCTTCATGA GGTTTTATAG 002320
002321 TGAATGAATT ATTTTTCTAT AAAGTTTATC AATATTTATT TTGGAAAGCT GCTGAAAATG TCTTTTTCAA AATTAATTAT 002400
002401 GCTTAAGATG TATGGCATTA AATTCAATTT TATGAGGCTT TCTGACATAT TTACTAAAAA AACCTGGAAC TGAGACTGAA 002480
002481 TTTGGAAGAC ATTTAATTTT GTAGTGAGAT ATCTATATTG TAGATATTGT ACTTTTAAAA CCTGTCATTA AGTGTTTGGC 002560
002561 ATGTGGTTAA TACTTTCTCT TTAGTCACAA CTGGTATTTT AATAAATGTT ATAAACGTAA GTGCCAAGAT ATGCATCACT 002640
002641 AACTGTTCTA TGAAATTTGT CTACTTCTCC TTTATGTTCC CAAAGTCACA GAGAAAGCAG TGTACTTTAT GACAGTATAT 002720
002721 TTATCTTTTT ATCATTATGA ATTATAAGCA GTGTTAATTT TGAGAAATAA AAGTCCAAAA AGAATTATTA TGAGTTTAAG 002800
002801 TTACTTTAGG ATTATATCTG TTGTATGGTA AATAAAATAA
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Predicted Small Protein

Name NONHSAT003744_smProtein_1289:1402
Length 38
Molecular weight 4700.4278
Aromaticity 0.324324324324
Instability index 96.0408108108
Isoelectric point 6.49932861328
Runs 5
Runs residual 0.0446317877511
Runs probability 0.057957957958
Amino acid sequence MSFFYFSFFPNKTYSLFHNIIYMVTLLQEYLYYLLQN
Secondary structure LEEEEELLLLLLLHHHHHHHHHHHHHHHHHHHHHHHL
PRMN LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLL
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