NONHSAT123132

From LncRNAWiki
Revision as of 06:45, 17 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT123132

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1926 nt

Genomic location

chr7+:126855181..126869975

Exon number

3

Exons

126855181..126855307,126859521..126859756,126868427..126869975

Genome context

Sequence
000001 AGCTGTGGGA ACATTCCTAC AAAGCTGATT CTCTTCCGAT TCTGCTGGAA TCCTGAGTCT CTCTCAAACT GGAATTATCT 000080
000081 TAACAATTCT TTTGCTTGAG GTTTCCTGGA CGGCATATGT GGATAATGGT CTCACTCTGT CATCCAGGCT GGAGTACAGT 000160
000161 GGCATGATCC TAGCTCACTG TAGATTCGAA ATCCTGTTCC AGTGGTCCTC CCACCTCAAC CTCCTGATCA ACTGAACTAC 000240
000241 AGGAATGCAC CACCAAACCC AGCTAATTAT TTTTTTGTAG AGGTGGGGGT CTCACAATGC TGCCCAGACT GTTCTCAAAC 000320
000321 TCCTGGCCTC AAGTGATGTT CCTGCCCAGG CCTAAAATTT TAAGGAGCAG GTGATGTTTA GCCTGGAGAA CTGAAGGCTC 000400
000401 AGGAAGAACG GGGTCTTCAA ACACCTGAAG GACTGTCTCA TGAAAAAGAG ATGCACAAGA CAGGAGAATT GAGCAGAGAG 000480
000481 ATGTTTAACT CAAATCGAAG AACAAAGACA GCATTGAATC ACCACCTATC AAGGGTCTTA CTTGAATAGA CTTTGGTTTG 000560
000561 GATGAGAGGC TATAGAAGAA AACCTCAAAA GTCTCTTCCA ATTCTAAGGT TTCATGATTC CAGGCATTTG GAGAATTAGG 000640
000641 AAAAATAATC ACTTAAAAAA AAAACTATTT AGTGCCAAGC TTCCTAAAAC ATCTTTAAAA TGTCAAATAT CCATGAATCA 000720
000721 TAGGGTATTA TCCATTTTAT TTGAAAACCA TGGAACTCTA CTACTAGAAC TTCATTCTAG GTTGTTTAAA ACAAAGTACA 000800
000801 ATGCAAAACT GTCTTCTTTC ATAAGAACCA TTTTCTAGAT GGGCATAGAT TCTTTGAGGG AATTCTTATC ATGCAGATAT 000880
000881 TTTACTTCAA AATCTAAACT TGTACCACTT TACTGGAATG AAATATTAAC GCTATTAATT TAAACATCAT AACATTTTTT 000960
000961 AAAAATAAGG TGTTAAAATA ATATTTATTC ATCAATCCTA TACCACTACA ATATTTTAGA TCAGTGATTT AATATCTGAA 001040
001041 AAATTTATCA CATACTATGC ATACCACTGA TCAGCAGAGG CTGAAATTTT ACTGTAACTT CAGTCCAAAG ATACAGGTTT 001120
001121 TAATTTGAGT TCTCCATAAT TCACAGAAAT ATTTAAGGGT AAATATAAGT CTTAATTAAA ATCCCTATTC TCCCAGCATG 001200
001201 TGCTAAACCC ACCCTGCTCC ACATGCAGAC CCTTGGCCCC AAACAATCCC GAGAGGATGT TGGCTCAGAG CAGCAAGGAG 001280
001281 CTGACAGATG GGGCATTCGG TAAAGGAGTG GTGCTGGGTT TTTTCATTTT TGTTAGAGAC GAAAGCTGTG GGAAAAACAT 001360
001361 TCTCCACTTA ATCTATTTTA TTTTCAGCAA GGTTTTACCT GTAAATATTA ATTTATACAC CAGCAAAACT CACTAGATGC 001440
001441 CTGGGCTACA TGAATATAAA TGAAATAAAG CTATCCAAAC TAAAAAATGA AATTTCCTGT ATCTTCCTTT CTCAGGCAGA 001520
001521 GGAAAAATAT CCAAGGATTT AAAATTCTAT CCAGTGGTTT CAAAGGCAAC AAAAGATCTC ACATTGAGCT CTCATTTAAA 001600
001601 TAGGTGGGGT TAACCAGGGT AGAAATTACA AGTTAAAGTG CTGCAGCATA AAGAAGAAAA ATAATCATTT ATGCCATTTT 001680
001681 CAATACAGAA TTTATTTCCA AATCAAAACC CTTTACACTT GGAATATTGT CAAATCTCAA ATTTTTACCT TGCTGAGATC 001760
001761 TACGACCACC TTTTGAAACT GAGACAGTGT AGGTATGATT ACTCCCTGTA TACTCAAGGG TTAGGAAAAT GGAAAAGAAC 001840
001841 CGTGAGCCCC TCAAGAATGG TGGCTTTTCT TATTGGAATG AAGTAAATAA AATAAATTCA TTGACAATGC AAAAAAAAAA 001920
001921 AAAAAA
[back to top]

Predicted Small Protein

Name NONHSAT123132_smProtein_1670:1885
Length 72
Molecular weight 8490.8364
Aromaticity 0.154929577465
Instability index 44.4635211268
Isoelectric point 9.30059814453
Runs 11
Runs residual 0.00637509266123
Runs probability 0.0283197636139
Amino acid sequence MPFSIQNLFPNQNPLHLEYCQISNFYLAEIYDHLLKLRQCRYDYSLYTQGLGKWKRTVSP
SRMVAFLIGMK
Secondary structure LLLEELLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLLEEEELLLLEEEEEELH
HHHHHHHLLLL
PRMN -
PiMo -