NONHSAT079686

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT079686

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1422 nt

Genomic location

chr20+:37076726..37078147

Exon number

1

Exons

37076726..37078147

Genome context

Sequence
000001 CGCCTGCATT CGTAAGTGAT CACGGGCTGC CCGTGTCCTG GTCATTGGTA GTGCAGGCAG AGGAAATGCG GGAAAGGTTG 000080
000081 CTGTGTTTGG AGGGTCCACA TCTTCACCCT CCTGTCCCAG GAGCTTTCCT ACACTCCTCC TTCTCAAAGC TGCACACACC 000160
000161 TGGGGCCTCC AGGGGATTGG GGGCTGCCGT GTGTGTTATA TCATGATTAG AGCTTTCACT TCCTGCTCCC TGCTGTTGGG 000240
000241 AACCAGGCTG TGTGTGTTGC TTAAATTCCC CTTGATGACC AGCAGAGTCA CTGCCACTCA GCCATGGCAC ACTGCTGTAA 000320
000321 ACCTGGTTTT GATCTCCTTT CAATCTTTTG CTGATTAACT ACACATTGAT CAGTGTTGGC CACCCTCACC CTGCCATAGA 000400
000401 CCATCCGCTG TCTTCCTCTG TAGAGTTAAC TATTTTCTCT TTTATGAGGA AATAGTGTGT TTGCTTAGGA GTGTTTACTG 000480
000481 TCTGGTAACT ACTGTGCTAA GCCCTTTCCT GTTGCCTGCC ATCCCTGCTG CGAGCAGGGA CAAGCTGGGT GCTCACTCAT 000560
000561 GGCATCTTAT CTGTTGCAGA TAGTCCACTG TGTGCAGAGG CATGGGAGTT GTCATGTTGG GAACATGCTA GACCTCAGTA 000640
000641 TCCTTGAGGT AAGATCTCTG GTTCATTCTC TGGAATGTTG GTTCCTTGTA TCTAGTACAG TTCTGTACAT GTTCCCAGGG 000720
000721 GCTTTGGGGT TGGTGTAGGG GAGCTGAGAG GTGAGATGAG AATGGCACTG TGGGTCCCCA GATCCGCTGT CCACCCAGCC 000800
000801 AACCCAGATC ACCTCTGGCC TTTCCTGTGC CTTCCGGGCT TGCTGCTGGG GGGAAACCTC CAGAGTCCCA CTTTGGTAAT 000880
000881 AAGAGGTCTC TGCCCTTTCT CCCTGGGCAG CAGGATGTTG TAATGGAAAA TGAGTGGACC TAGGCTTCAG AGACTCTGGT 000960
000961 CCCCTGGCTT TGAATCCCCT TCTGCCACTA TCCCAGTCAA GGACTGATTC AGAACCTAAT TTTCTTCATT TGGAAAATAA 001040
001041 TGTTCTGATA GAGGTGACTT TTGTGGTACT TGAGACCATA TGATTCCTAT CATTACCAAC CAATATTTTC CGATTGTTTT 001120
001121 TGCCCCATGT GACTTCTCTG TGATTCCTCC TGGCAAGGAA GTTTTACAGG AAAGCAGGGC CACTTTTGGG ATCCTGTGCT 001200
001201 GGGCTGGATC ATTTTCCTGG ACTGGACCTA GTCCACAAGC TGCTGGCATC TGTTTCTCCT CATGGATCTC TCTCTGCCCT 001280
001281 TGTATACACC TGCATTCAAA AATGATCACG GGCTGCCTGT GCTCTGGTCA TCAATAACGC AGGGAGAGGA ATTGCTGAAA 001360
001361 GCCGTTTCCC GTGTTTGGAG GGTTCACACC TGTCCCTTTC AAATGCTGGC GCTTTCACAC AC
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Predicted Small Protein

Name NONHSAT079686_smProtein_1079:1336
Length 86
Molecular weight 9232.7521
Aromaticity 0.117647058824
Instability index 41.4576470588
Isoelectric point 6.78167724609
Runs 17
Runs residual 0.0634581105169
Runs probability 0.0329239273876
Amino acid sequence MIPIITNQYFPIVFAPCDFSVIPPGKEVLQESRATFGILCWAGSFSWTGPSPQAAGICFS
SWISLCPCIHLHSKMITGCLCSGHQ
Secondary structure LLEEEELLLLLEEEELLLLEELLLLHHHHHHHHHHLLEEEELLLLLLLLLLLLLLEEEEL
LLLLLLLEEELLLLEEEEEELLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHH
HHHHHHHHHHHHLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooooooooooooooooooooooooooTTTTTT
TTTTTTTTTTTTiiiiiiiiiiiii