NONHSAT145815

From LncRNAWiki
Revision as of 03:19, 17 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT145815

Source

NONCODE4.0

Same with

,

Classification

sense

Length

577 nt

Genomic location

chr17-:15341049..15355934

Exon number

2

Exons

15341049..15341517,15355827..15355934

Genome context

Sequence
000001 GCATTTGAAA GAGCAGCTAA CATCCGTTAA CAACATACAG AAGATATCCC TGGAGCCATA TTTGGCGGTG ATGACACCTG 000080
000081 GCCCTGGTAA AAGCACATAT TGGACAAGGA CTCACAGAAA ACACTGGACT TCCCCGGAAG CTACTTGAAA AACATGACCC 000160
000161 CTGGCCGGCC TATGTCACCT ATACCTCTCA GACAGTGAAA AGACTCATTG AGAAAAGCAA AACTAGAGAA CTGGAATGCA 000240
000241 TGCGTGCCCT CGAGGAAAGA CCCTGGGCAT CAAGGCAGAA TAAACCTTCC AGCGTCATTC AGCCGAAAAG GAGGAAGTCT 000320
000321 TCCAAGTCTT CTGGCAAAGC TGTGTTCAGG GACACGCTGT CAGAATCCAC GTTATCAATG TGGGGCGCTT ATTCGGTATT 000400
000401 GGCCATGGCT CCTACCATGA TCCCAGAACC CACACACTTA CATGCGGATT CCAGAGACTG TCCAACTGAA AACTATAACA 000480
000481 AGATCATCTT TGCCCGCAAG CCTATGATGA GGATGCTCCC TACAGTTCGC TACTGACCAA CAAGGAGAAA CATGCAAATG 000560
000561 TTTTAGCCAG GGGTCCC
[back to top]

Predicted Small Protein

Name NONHSAT145815_smProtein_239:535
Length 99
Molecular weight 11254.9709
Aromaticity 0.0714285714286
Instability index 50.5826530612
Isoelectric point 10.3340454102
Runs 12
Runs residual 0.0165935533092
Runs probability 0.0283445209916
Amino acid sequence MRALEERPWASRQNKPSSVIQPKRRKSSKSSGKAVFRDTLSESTLSMWGAYSVLAMAPTM
IPEPTHLHADSRDCPTENYNKIIFARKPMMRMLPTVRY
Secondary structure LLLLLLLLHHHHLLLLLLLLLLLLLLLLLLLLLEEEELLLLHHHHHHHHHHHHHHHLLLL
LLLLLLLLLLLLLLLLLLHHHHHEELLLHHHHLLLLLL
PRMN -
PiMo -