NONHSAT083375
Revision as of 00:13, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT083375 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2459 nt |
Genomic location |
chr22-:19025350..19044566 |
Exon number |
4 |
Exons |
19025350..19026634,19028571..19029472,19035953..19036156,19044499..19044566 |
Genome context |
|
Sequence |
000001 GCACCACGAC CTCCACAGCT GGCACGCCGA GAGCTGCTAC GAGAAGTCTT CATTTCTGTG TAAAAGAAGT CAAACATGTG 000080
000081 TTGACATCAA GGACAACGTG GTGGATGAAG GGTTCTACTT CACCCCTAAG GGGGACGACC CATGCCTGAG CTGCACCTGC 000160 000161 CATGGAGGGG AGCCTGAGAT GTGTGTGGCT GCTCTCTGTG AGAGGCCCCA GGGCTGCCAA CAGTACCGCA AGGACCCCAA 000240 000241 AGAGTGCTGC AAGTTCATGT GTCTGGACCC AGATGGCAAC AGTCTGTTTG ACTCCATGGC CAGCGGGATG CGCCTGGTCG 000320 000321 TCAGCTGCAT CTCCTCCTTC CTCATCCTGT CACTGCTGCT CTTCATGGTC CACCGGCTGC GCCAGCGGCG CCGGGAGCGC 000400 000401 ATCGAGTCCC TGATTGGAGC AAACTGTAAG TGCCCTCTGA GGGCCACAAC CCTGGTCCCC ATCCCCACCC CAGGTCACCC 000480 000481 CATGTCTCCA TGAGCTCCCC AGCCCTGGAC AGAGAGGGGC AGAGGCAGGT TTGAAGGCCA CATGTTGTGG GGTCTGTGTC 000560 000561 CTCACCTGTG GGCCAGGAAA GTTCTTGCCA AGACCCTCCT TATTCCCATT GAGCCACAGG GTGGGCAGAA CTCGGAGGCC 000640 000641 TCTGAGGGTC AGAGGCCCGG ATCACCCTTC CAGCTGGAGG GGTGTGGTCA GCCAGAGGCT GGGTCTGACA GAAGTGTCAG 000720 000721 CCCAGAGGGA CAGGTTGGTG TGGTGAGGGT GAGACATGCC ACGGAGCACA CCAGGGGTCT CATGGGGATG CCGAATGTGG 000800 000801 CCGAGGGGTA GGCAGCGGGG CACAGGTGTG TGCACTCAGG GACGGCAGGC CCAGCCTGGG GGTGGGGGGC TCAGGAGCCA 000880 000881 GGCAGCCTGC CCCCAGTGAC TTGTCTCTGT TCCCGTTGCA CACTTTTGAT GGCCCAGTGC ACCACTTCAA CCTCGGCCGC 000960 000961 AGGATCCCTG GCTTTGATTA CGGCCCAGAC GGGTTTGGCA CGGGCCTCAC GCCGCTGCAT CTTTCTGACG ACGGAGAGGG 001040 001041 TGGGACTTTC CATTTCCACG ACCCTCCACC TCCCTACACG GCATACAAGT ACCCGGACAT CGGCCAGCCC GACGACCCTC 001120 001121 CGCCGCCCTA CGAGGCCTCC ATCCACCCGG ACAGTGTGTT CTATGACCCT GCAGACGATG ATGCTTTTGA GCCTGTGGAG 001200 001201 GTCAGCCTGC CAGCCCCTGG GGATGGTGGG AGTGAAGGTG CATTACTCCG GCGCCTGGAG CAGCCTCTGC CCACTGCGGG 001280 001281 GGCCTCTCTG GCAGACCTGG AAGACTCTGC CGACAGCAGC AGCGCCCTGC TCGTGCCCCC TGACCCTGCC CAGAGCGGGA 001360 001361 GCACCCCAGC TGCAGAGGCA CTGCCAGGGG GTGGCCGCCA CAGCCGCAGC TCCCTCAATA CTGTGGTGTA GACGGCCTGG 001440 001441 CCTGTACCCC AACGGTCTGG GAGCACCTGT CTGTTGTAGA AAACACCGGT CCCTGGGGAG ACTTGAAAGG CCCCTGTCCC 001520 001521 AGCCTGGACG CCACGCACTG CCGCACGTCA CTGGCGGGCT CGCGTGTGTA CATAGAGACC ACAGCCCGCC TTCTGCCAAA 001600 001601 AGAAGTGATG GCCTGCACCG AGCTTCCTTG AGGGCTTCAG AAACATGCAT AGCTTTGGAT CACTGTCTTC TCCTTTATAA 001680 001681 ATGGCAGAAG AGTGACAAAA TTCATTCAGA CCGCACATGT TAGAGGCAGG GAATGAAGAA GGTACTGTGG GCCATGGCCA 001760 001761 CACCTGATGC GTTTTTGGTG GGCTTACTTG GTGCAGTGTG CTGTCCAGAG AGACCTGCTG ACCCAGTCTG GGACAGGCAC 001840 001841 AGTGGGAGCT GCCACAGTGC CCCTTGCTGG CCGCCCTCAG GAGGGGGCCT CTGGACCGTC AGTGTGGCGT AGGCAGTGGG 001920 001921 TCTGCTTCAG GGAGGCAGCC TCTTGACTTT GTCACAACGG TTGCACTGAA GATGGCCCCC ACAAGCCCAG TTGTGAATAT 002000 002001 CAAGGTGACC CTGCCCCTGG CTGGGAGCTC CCCTGGGGCT CTGGAACCTG AAGCCCTGAG AAGGAGAGCT TGGAAGGAGG 002080 002081 TTGAGCTCTT CACTGTGTCT TTCCATCTGG GCTCTGCAGC CCAGCTCTGT GGCAGGAGGC CTGACCCCAC CCCATCAGTC 002160 002161 CCTCTCCCAG CATTGCTGTG CATGGCTCCC TCAGGAAGAA GCTCTGGAGT GGGGCCGAGG CCCCAGATGC TCTGCTGGGG 002240 002241 TCTGGGGACT GAGCTGCCTC CTGTCTCTCC ACTCTGGAGC CCTGGGCTCT TGCCTCCTGT TGAATTGCCC CTGGGCCTGC 002320 002321 CCCCGGCCCC ATTTGTGCCA TAAAGGGTTG CTTCATTGCA GGAGGGGTGG CTGAAACCAC CATCCTGGGC TGCATCTATC 002400 002401 TCCTTAAAGT CCACTCCTTA CATCACCGCC ACTACTGCAG CTCAGTGCCC AGCGGCCGC |
Predicted Small Protein
Name | NONHSAT083375_smProtein_161:412 |
Length | 84 |
Molecular weight | 8354.3736 |
Aromaticity | 0.0602409638554 |
Instability index | 51.8891566265 |
Isoelectric point | 8.76898193359 |
Runs | 12 |
Runs residual | 0.0045515394913 |
Runs probability | 0.0455823470529 |
Amino acid sequence | MEGSLRCVWLLSVRGPRAANSTARTPKSAASSCVWTQMATVCLTPWPAGCAWSSAASPPS SSCHCCSSWSTGCASGAGSASSP |
Secondary structure | LLLEEEEEEEEEELLLLLLLLLLLLLHHHHHLLHHHHEEEEEELLLLLLLLLLLLLLLLL LLLEEELLLLLLEELLLLLLLLL |
PRMN | - |
PiMo | - |