NONHSAT008339
Revision as of 19:48, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT008339 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2069 nt |
Genomic location |
chr1-:182806370..182808438 |
Exon number |
1 |
Exons |
182806370..182808438 |
Genome context |
|
Sequence |
000001 GCGCAGAGCG CGTGCCAGGG CGGGGGATGG CGAGGGCGCG CCAATGGAGG GGGCGGGGCT CAGCAACCTC GCGGCGCGGA 000080
000081 AGGGTTTCGT TGCTAGGGAG ATGGGCTGAG CCGGGCGGGC ATCGCGCCAG ACCTGCTACT CTGGATAATC CACTCTCCTG 000160 000161 GATAATCCAC TACCCTGGAT AATCGGCTGC CCGCTTTTGC GCATGTTAGG GAGTTGACGG CCTGTAGCAT TCTGATGCAG 000240 000241 CAAAATATTT CGCAGGGTCT GTCATAGGGA TCTCCGGTGA GAGGAGGTTC CCTTCGAAGG CAGAACTGGA AACCTTGCTG 000320 000321 CTAacttggt agggttgttg agataattac atgagatggc atatgaaggg cggcttagtt caatacctgg catgtagtag 000400 000401 gtgttcagtG GGCGTAGTTA CCGGATTGAT TCAGATAGTC TGAACGCCAG TGTCTCTTGA AAGAAATAAA CTggccgggc 000480 000481 gtggtgactg taatcccagc actttgggag gccgaggtgg gcgaatcact tggggtcagg agtttgagac cagcctggcc 000560 000561 agcgtggtga aaccccgttt ctactaaaaa aaaaaaaaaa aatacaaaaa ttagccgggc atgggggcgg gcgcctgcaa 000640 000641 tcccagctgc ttgggtggct gggcgggctc ctgcaatccc agctactcgg gaggctgagg caggagaatc gcttgaaccc 000720 000721 cggggtcggg ggcggaggcg gaggttgcag tgggccgaga tcacgccatt ttctgggcga gagagcgaga ctccgtctca 000800 000801 aaaaaaaaaa aaaaaaCCAT GAAAGAAATA AGCTCAGTGA AGGCGGGCAT TCTGCCTGGC TAACGCAGGT CGCTCCTTGC 000880 000881 CGTGCCTGGA ACATTACTGT AAGTGCTCAG CAAACTACTT TAAGGTAGGA ATAAAATCTG CAAGGTTGCT TTTGTTTAAA 000960 000961 TTGGATAACC TTTTGTGTTC CAAGTCTTTG GAGTAATTTT GTGTTCCAAG TCTTTGGAAT AATTGTGTCC TTAATTATTA 001040 001041 TACTAGTCAC TGTTAAATTT TGAAACTCCA GTGCGTCCCA TGAAGGTAAT GATACAAAAC ATTTCCAGCT GGGATTGTTC 001120 001121 CAGGGAATCC AGACTAATCA ATTATCTGGG CTCATTATAT CTATGGATCT TTATTTTTCA CCTCTTTCCT TATGTTTTTC 001200 001201 TTAATCCTTC TAGCTGATAG TGATCACTCC CTTTAAAACT GTCATTCTTA AAATCAGAAC AACATAGTTT ATCATTTACT 001280 001281 TATTATTTTC TTCATGTGAT TGTTCTCCTT AATTAAGAAT AAAATCATTG AAGGAAAGAC CTTAATTTTT TTTTTTTTGT 001360 001361 ACCCTTCAGG GTGTTGAAAG CAGCAGGGGC CTagaagaca ttaaaccgat accacagaaa tacaaaggat cattagagac 001440 001441 tattatgaac aactatatgc caacaaattg gaaaccaaat ggaaatggat aaattcctga acagatacaa cttaccaaaa 001520 001521 ttggaccaag aagaaataga aaacctgaaa agaccaacta tgagtaatga gattaaatca gtaatataga gtctcccatc 001600 001601 aaagaaaagt ccaggccctg atggcttcac tgctgaattc tactgaacag ttaaagaaga actcatacca gttctcaaac 001680 001681 tcatcctgtg agggcagcat taccctgata ccaaaactag atatggacac aagaaaaaaa atctataggc cagtatccct 001760 001761 gatgaacata gatgcaagaa tcctcaacaa gaccaggtgt ggtggttcat gcctgtaatc ccagcacttt gggaggccaa 001840 001841 ggcaggtgga tcacctgagg tcaggaattt gagaccagcc tggccaacat ggcaaaaccc tgtctgtact aaaaatacaa 001920 001921 aaattagccg ggcaaggtgg cgtgtgcctg taatcctagc tacttgggag gctgaggcag gagaattgct tgaacctgga 002000 002001 gggaggaggg gcagaagttg cagcgagctc agatcgtccc actgcactcc agcctgggtg acagagtga |
Predicted Small Protein
Name | NONHSAT008339_smProtein_1808:2068 |
Length | 87 |
Molecular weight | 9604.9132 |
Aromaticity | 0.0697674418605 |
Instability index | 89.9476744186 |
Isoelectric point | 9.49041748047 |
Runs | 9 |
Runs residual | 0.0349704963554 |
Runs probability | 0.0490686765196 |
Amino acid sequence | MPVIPALWEAKAGGSPEVRNLRPAWPTWQNPVCTKNTKISRARWRVPVILATWEAEAGEL LEPGGRRGRSCSELRSSHCTPAWVTE |
Secondary structure | LLLLHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEELEEEELHHHHHHHH HLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |