NONHSAT107698

From LncRNAWiki
Revision as of 10:31, 16 October 2014 by 192.168.72.52 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT107698

Source

NONCODE4.0

Same with

,

Classification

sense

Length

3528 nt

Genomic location

chr6+:10521565..10629600

Exon number

5

Exons

10521565..10521650,10527707..10527893,10528864..10529074,10621584..10621676,10626650..10629600

Genome context

Sequence
000001 GTTAAACTGC GTTTACCTTA AACAGGCTTA CTGTGTTCAC TGCTGGACGC CTCTGGGCAA TCTTACCCTC CTGGGAACTG 000080
000081 AGAGAGACAA TGCTAGGAGC CAGAAACATG AGGAATACAT GAGCTCGGCG CCAATGGAAC ATGCTTTCAC ACCGGGTGCA 000160
000161 GCTAACCACC ACATCATACA AAACTCGTCG CTGACGTTTT AGATGTATAA TCTGATTGGC ATGGACTCAC AGAGGAGGGA 000240
000241 GTAAGGGAAG AGTAAGAAGA TTTCAAAGGA GAGACACAGG TTGCAGGTTA GCAGGAGAAC AGGCAAGCCA AATGCAAAGG 000320
000321 AGCCACTTCA GAAATGTGTC ACAGAAAAGT GAAAATGCAA CCTAGTGGTA AGTGAAGAGG GGAAGAAGAA AGAAAAAGGA 000400
000401 CCAGAACCGT GAACTGAAGG GACAGGGAAC AGCCAGACGA GAGCTTCAGC CATCACGAGG ATGATTTCGG AACCTGGAGA 000480
000481 AAATGTGTTC CTGGCTCTAT GCCAAATGCA TCCTGGACTG GAAACCTCAG AGCTATAAAG TGGAGTGACA TGGAAGACAG 000560
000561 ACACGGAGGC TGCCACGGCC ACTATGTACA TGGTATTTGT ATCTATGGAA ACGGAGACTT AAAGTGGCTG GTTAATTCAC 000640
000641 CAAGCCTGTT TGCTAACAAG TTTGAGCTTA ATACCTACCC CCTTACTGTG GAATGCCTAG AACTGAGGCA TCGCGAAAGA 000720
000721 ACCCTCAATC AGAGTGAAAC TGCGATACAA CCCAGCTGGT ATTTTTGAGC TATTCATGAG CTACTCATGA CTGAAGGGAA 000800
000801 ACTGCAGCTG GGAAGAGGAG CCTGTTTTTG TGAGAGACTT TTGCCTTCGT AATGTTAACC GTTTCAGGAC CACGTTTATA 000880
000881 GCTTCAGGAC CTGGCTACGT AATTATACTT AAAATATCCA CTGGACACTG TGAAATACAC TAACAGGATG GCTGGGTAGA 000960
000961 GCAATCTGGG CACTTTGGCC AATTTTAGTC TTGCTGTTTC TTGATGCTCA CCTCTATATT AGTTTATTGT TAGGATCAAT 001040
001041 GATAAATTTA AATGACCTCA GATCTTTGCA CCAGATACTC ATCATATACA AATGTTTTAG TAAAAAAGAG AATTGTAGAT 001120
001121 AATACTGTCT AGGAAAATAA GAATTAGGTT TCTTTGAAGA AGGAATCTTT TATAACACCT TAACAGTCAC CACTGTGCTC 001200
001201 AACCAGACAG ATAGTGAAAC AGCTTTCTGG GTAATTCACC AATTTCCTTT AAAACATAAG CTACCTGAAT GGAGAATACA 001280
001281 TCTTGTTTCT GAGTTTCAAC ACTAGCATTT TTGGCTTACT CATGGACAAA GTTCTGTATA TAGTATAAAG TCATTAACAA 001360
001361 GAAACAGGAT ATGCTTTAAG ACAGAATTCA CTGTCTGTTG CTTCAGTAAA AGGACCTCGG GGAATAAAAC ATTTCTCTCT 001440
001441 TATATGCCAG AATGTAGGCT GGTCCCTATG TCATGTCTTC CATTAAGAAC ACTAAAAAGT CCTTGCAAGA ATGGAGATAT 001520
001521 GCATTCAAGA GAGGTGCTAT CACATAGATC TAGTCTGAAG TCTGGAACAC TTTCCTCTTC TATGACCCCT CTCTCCCCAG 001600
001601 TATTATCTTA CTTGCAAAAT GGAGACCAAA TTCTATCCTG TGAGGCTTTT AATTGCACCA TAGTATGCTC TGAGTAGCTT 001680
001681 TACACTGCCT GGTACTGATA GTAGTGGCTC GATTTTTAAG AGCCTTCAAT TGTAGATGAA CATCTCTGTT ATTTATCCCt 001760
001761 cattcatcca tccgttcatt cattcaGCCT TCAATCAACA TCTCTTGAGT GTCTATTATG TACAGGACAT GTACTGAGAC 001840
001841 AAAAAGGAAA CATAAGAGCT TTTTCACTCT AAAAATCTTG GCAATAATGT CAACACCAGA AAGCCTCCTC TGGAGAATCT 001920
001921 TACAGAGTGA TTGTAGTTTA ATACAGGAAC ACACAGGGCT GTGTAGCATG ATACCAGGCC CAGGAGATCA GTAATTACAA 002000
002001 ATTAAGGGTT AAATCAGAGA TTATTCAACA GAGAGGGAGA AAGGAGGAGA CAGAGGgagg acctgttgtg ttccagccat 002080
002081 tctggtattc ctttatgtat ctaatttcat tcaaacctca caacagtctt gtgaggccct tatataatta ctcccatttt 002160
002161 gcagatgaag taactgaggc ttagaaaggt taaTAGCACC GGGGAACAAT TTCTCTGGGT GAGAATTGGG ACTCTGTTGC 002240
002241 TGGTCTTCTC AGTTCATTTC CTGAGGTGGA TTTACTGAGA GAAGGTGAAA TAAAGCCATA TTTAGTATAC CAGAGAAGGT 002320
002321 AGATTTTAAG AATGGTCTCA GTGTTAATAC TGAGAAAAAG TCCTGTCAGT TCAGAAAAAA TGTGAAGTCT ACTTTAGTAT 002400
002401 TCCTGTAATA CTAAACCGTT GAGTTTCTAA ATATTTATTT ATTCTAACAA AAAGCAATTA CTACAAATGG ATGACACATT 002480
002481 TAATGAACAC AATTTTATTT TTTTTCTGTA ACTGTGCTTG TTGAATGTCA ATCATATTTA AAGGGAATGA CTTTGAAGTA 002560
002561 AAACCTTTTT TCTTGCTACT GAAAAAAATG GAGTTGTTTT GGGTGGTAAA GTGTTAAGGA ATAGGGACAG CTGGTCACAC 002640
002641 AAGGAACTCT TGAAGGCCAC ATGTGAAAAC CTGTCACTTG CACAGAGGCC AGTCCCACTA AGGTGACCAG AGTGGGCTCC 002720
002721 AAGCACAAAC TGCCATTGgc tatagatggg actgtgtccc cccaaaattc atgtgttgga gccttaaccc tcaatgtgat 002800
002801 ggtatttgag atggggcctt tggtaaggga agtttagatg aggtcacgag ggtaggaccc tcatgatggg atgagtcccc 002880
002881 ttacaagacc tcTGGCTTGg gccgggcgtg gtggctcaca cctgtaatcc caacactttg ggaggccaag gcaggtagat 002960
002961 cacttgatgc caggagttcc agaccaggct ggccgacatg gtgaaacccc atctctacta aaaaatataa aaattagccg 003040
003041 ggctttgtgg catgtgcctg taatcccagc tatttggcag gctgaggcat gagaatcgct tgaacccagg aggtggaggt 003120
003121 tacagtgagc tgagagtgcc ccactgcact ccagcctggg tgacagagcg agactttgtc ccaaaacaaa aTAGGTGAGG 003200
003201 GGATAGCGAA TGCACTCAGG GTCAGCAGTG GAGTTTAAAA ATTGTCTCTT TTCAACTTAT TTAAATGACA GCACCTGAGA 003280
003281 AGAGGAACCG TTTTACACTG GATGTTTCTC ATGTAGAACA AGAAATCTTT CTGGAATTGA TGTTTACATG TCTGTTGTTG 003360
003361 GTCATCTCTC CTGTGTCTTA AATACTTTAA TGTTGGAAGA GCATAGTGTT TGGGCTAGTG GGTTTCTGAC AGCCCATGGG 003440
003441 AATGCCCTGA AACTACTGTA TCTGATGTTT GTTTTCGATG AGGTTCCATG TTTTGTTTTC TTGGGAATAA ATTAATATAT 003520
003521 TGTTTTCC
[back to top]

Predicted Small Protein

Name NONHSAT107698_smProtein_1817:1993
Length 59
Molecular weight 6642.7478
Aromaticity 0.0689655172414
Instability index 63.2862068966
Isoelectric point 8.59088134766
Runs 11
Runs residual 0.0330617658204
Runs probability 0.0310417369241
Amino acid sequence MYRTCTETKRKHKSFFTLKILAIMSTPESLLWRILQSDCSLIQEHTGLCSMIPGPGDQ
Secondary structure LLLLLLLLLLLLLLEEELEELEELLLLHHHHHHHHHLLLHHHHHHLLLLLLLLLLLLL
PRMN -
PiMo -