NONHSAT089456
Revision as of 10:42, 16 October 2014 by 192.168.72.52 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT089456 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2137 nt |
Genomic location |
chr3-:46795974..46854064 |
Exon number |
5 |
Exons |
46795974..46796138,46796900..46797162,46797532..46798119,46852596..46853363,46853712..46854064 |
Genome context |
|
Sequence |
000001 GCTCCAAGTT GCCGCCAGAA CCCATGGCCG GCGTGGAAAC CGCTGCGAGG CGGCGCCACG ACGGAGGCTG AGGTCGCCGG 000080
000081 CAGTATCCAT GGCGTCCCAG AGCGGCAGCT CCCTGGGGCT CCTGGCCTGG TTCTTGCTTC TTCAGCCATG GCTCGAAGAG 000160 000161 GCCCGGGCAG GCAGGGTGGG TGCGCAGGGA GGCGTAGCAC TGCTCTTCCC CTCCGCGCTC CCCTCAGGGC CAGGCGGCCA 000240 000241 GGACCCCGGA GCGAGCGGAT GGGAGCCGCC ACCTGTAGGG GCTCCAGGAT CCCCAGCGGC CCCCCAGTCC AGGGGGAACG 000320 000321 CAGTGCGCCC CGCTTCGGTG TTACTTCCCT CAGCCTGTGG CCAGCGGACT TCAAGGATAA CTGGAGGATT GCCGGCTCCA 000400 000401 GACAGGAAGT GGCCCTGGCA GGTGAGCCTG CAGACCAGCA ACAGACACAT CTGCGGAGGC TCCCTTATCG CCAGACACTG 000480 000481 GGTACTCACT GCCGCTCACT GCATCTCTGG GTGAGGGTTT GGGGCTCAGA GCTTGGGCCC TGATCAGGCT GTGGGACCTG 000560 000561 GAGCCAGTCT GTCCCCCTCC CTGAACTTCC TCTTCCTCAT CTGTAAAAGG GGGTGACAGC CCCATAGTTT TTATCCAGTC 000640 000641 TGGGTGAGAC CTGAGGATTT GCATTTCTAA CAAGTTTCTG GGTGTTGCCT CCGCCGCTGA TCTGGGGACT ACTGGCTAAA 000720 000721 GTGGTCAGGG GTCCTGGAGG GATGTGGCTT GGAGAGAGGG AGGTAGCTGC TGGCTGGCAT AGGAAGATGG TACCAGGCGG 000800 000801 GAAGCACCTC GAAGGTGTGG AAGCAGAGTG TAGACCCTGG AGGATCTTCC TGCAGCCATC TGGAATACAC AGTGAAGCTG 000880 000881 GGAGACACAA ATGTGCATCA TCGCTCCAAA ACAGCACTTG TGGTCCCAGT TCGTGACGTC GTTATCCACC GATATTTTAC 000960 000961 GTCTCCTGGA ATAATTGAAA ATGACATTGC CCTTGCCCTG CTTGACTTCC CTGTGAATTA CTCCACGCAC ATCCAGCTTG 001040 001041 TGTGCCTCCC TGAACAGGCT TTCATGGTGC AAGCTGGTAC GAACTGCTGG GTGACCGGAT GGGGCAAAGT AAATGAAACA 001120 001121 GGTGAGCCAT ACCGACCCGA GGAGGATTCC AGAATGACCC CGGCAAGCCC AGAAGCCCGG ACGTCTCCTG TGCACCCGAA 001200 001201 ATTCCCCAAA ATTCCAGAAA CTTCTGTAGC TCCAGGGTCT CCAGCGACCG CAGGGCCTCC AGGATCCTGG GTTACTTCAG 001280 001281 CATCTACAGT GGGAGAAGCC TTGGAATCCG ACGGAATCTC TGACCTTGGA AGGCAGTTTT CTCAGGGTAT TGTTTCTGGT 001360 001361 GCTAGATCTG TCCTGGCCTG CGGGGTAGGT CAAAGGGGAC ACAGCCTGGC TCAGGGAGGT TGAGGGTCAG ACCCTGACCT 001440 001441 AGATGATTTG AGAGAGAGGA TAGATAACCC GCCTCCGCCC TGGGCAGCCT GGTGGGGTGG TGGGAAGGTA GTGGCTTCAC 001520 001521 TTCCAGTCCC CTCTCTTTAC TGAGCCCACC AGCCTGTGGC CACCGTGTTT CAAGGATGAT TGGAGGATTG CCAGCCCCAA 001600 001601 ACAAGAAGTG GCCCTGGCAG GTGAGCCTGC AGACCAGCAA CATACACCAC TGCGGAGGCT CCCTCATCGA CAGGCGCTGG 001680 001681 GTGCTCACTG CCGCCCACTG TGTCTTTAGT AATTTGGAAT ACAAGGTGAA GCTGGGAGAC CCTGACTTGC ATGCTGGTTC 001760 001761 CAAAGAGGCA CTGGTGATCC CAGTTTGAGA CATCATTTTT CCTAGCAATT TTGATTTTGC CACTTTGACA AGCGACATTG 001840 001841 CCCTTGCTCT GCTCGCCTAC TCTGTGAATT ATTCCTCACA TATCCAGCCT GCGTGCCTCC CCGAAAAGCT TTTTGAAGTG 001920 001921 GAAGCTGGGA CAGAGTGCTG GGTGACTGGA TGGGGCCAAG TGTCAGAGAG TGTTTCAGGA CCAATGCCAC TTGTTCTTCA 002000 002001 GGAGACTGAG CTAAACATTA TGCGTCATGA GAAATGTTGT GAGATGCTCA AGAACAAGAA TATATCCAAG AGTAAAATGG 002080 002081 TCACGAGGGG GACCGTCTGT GGCTATAATG ACCAAGGGAA GGATGCCTGT CAGGTCA |
Predicted Small Protein
Name | NONHSAT089456_smProtein_890:973 |
Length | 28 |
Molecular weight | 3143.7196 |
Aromaticity | 0.0740740740741 |
Instability index | 49.7518518519 |
Isoelectric point | 6.51995849609 |
Runs | 5 |
Runs residual | 0.0214707461084 |
Runs probability | 0.00448683978095 |
Amino acid sequence | MCIIAPKQHLWSQFVTSLSTDILRLLE |
Secondary structure | LEEELLLLHHHHHHHHHHHHHHHHHHL |
PRMN | - |
PiMo | - |