NONHSAT090199
Revision as of 09:52, 16 October 2014 by 192.168.72.52 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT090199 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2087 nt |
Genomic location |
chr3+:62973011..62975097 |
Exon number |
1 |
Exons |
62973011..62975097 |
Genome context |
|
Sequence |
000001 tgtgctcaaa aaatttgtgt caaataaatg tatGAATTTC ATCCATTTAT CCAGGGCata atttagtata gtgtttaaga 000080
000081 acctgggcca tggaatcagc ctgcctctct cagaatttct gctctaccac tagatagttt tgggacattt acttcacctc 000160 000161 cgtaagcctc agtttcctca tctgcaaaat gggtatactc aaagaacatg attcatggag aagatgcata cagaatactt 000240 000241 agcctggtgt ctggcattta ctgaacattc agtaggtgtt aactgttatt ATAAGTGAAA AAAATTAGTA TTCAAATTCT 000320 000321 TCTTTTGCTT TCTTTGGAGG TACAATGTTT TCAGAAGAAT AATATGTGGA AGAAGGGTAT TAGCATTAAA GGAatacctc 000400 000401 agctccttta atcctcacaa ctatcttatg agatagcgct gttttcctat tcaaaaatga ggccactgag tcttagcaag 000480 000481 gttgaatgac atgcccaagg tcacatgcgg gcagagttgg gattcgcatc tagatttgtg tcatcctagt attggtctta 000560 000561 gtcttgccac tgtaacaccc gccccctgTC TCCTTACTTT AGCAGTCACG ACCTTGAGCA TTTTCATTTT GACTGAACAC 000640 000641 GTCCGCTCTT TCATGGCTCT CAGTTTGCTT ATGTTTATTC TGTTCGGGTC CTCTTTTCCC TTCATTTATG CTCTTTGAAA 000720 000721 TTCTACCTGT CTTTTCAATT CCTGCTCAAA GCCATCTCCT CCCTCAGCCC TCCAATTTAA CCCCTTTCTC TGCTATGCTG 000800 000801 CAGACACACA CTGCCTTCTA CCCACGCATT AGTTATTCTG TACCATGTTT CTTCCACAGA AGATGGGGAT CTCCTTGAGT 000880 000881 CTGTGAACTG CACAAGGCTC CTCTTTGTGT CTCTACGGTG CATGGCACAG CATAGTGCAG TTACAACATA GGCAAACCTG 000960 000961 ACTTCCAGGA TCTTAACTGC GCCAGCTTGT AATGCCACCA TCATATTTCC TGCTTTAAAC AGTCAGCAGA TGCAAGTAAG 001040 001041 CCTGCCAGTC AATGCATTTG TCAAAACAGG CTGAGGTGTT CTACCTAGTG GCCGGAGGTA AAGCATATTG GTCTAGTGGC 001120 001121 CATGTGAATA GGTGGTGATG CTATATCAAT ATCTTCAAGG AAAGACATTC GGGTATTAAT TGTGAGTCAT AGAGTAATGC 001200 001201 TGATCAAGAA AGAGATAGAT AAACTGATAC AGGGCTCTAA ACACAAGAGT CGTACATACA GTATGGCACA CAATGGTACA 001280 001281 TTAGGATTGT TTTAAAGGTG ATTTTATTAT ATGCAATTTA TGTCTGACcc tggcacacaa taggcatttg ataaacgttt 001360 001361 actaagtTGT GGAGTTGATT TGAATTAAAA TAAACCAATA CTGTATGACT TCGAAATTGA GGGGATACCA CATACCAGAA 001440 001441 AAAGAAAATT GCTTTATTGC CCTTACATAG TTGCCTACAA TTTGGTGTAT ATATAGAAAT GTATCTTGAA TGCTAAAGAT 001520 001521 AGCACAAGTA ATTGAAGGTG GACTGAAGGG TGACAAGTGA CTTGATTAGA AAGGAAATTT CATCTTGTCA CTTATTACCT 001600 001601 GGAATCCAAA TTTATGCAAG ATCAGCCAGA AGGCAATTTT CATTTTATCC AGGATAAACC AGAGCTTAAG CTCCCAAAGC 001680 001681 CTGTCATCTT GAATGTCTCC AATAGTCACT CAAATTGTTG GTGCACTCTT GTTTAGCATG TTTATTACAA TTGTCATGCT 001760 001761 GTCTTGATTT TTCTAAAATT ACAATCTCAT TATTACAGGA TTTTCTGTTG AATGACACTT CATAAAAAAG ACTTTGATTG 001840 001841 CTGAGTTACA AAGACAATTG TATCTTCTTG TAAAGCATAC AGTCTTGGTG GTCCTACCCC ATGAACTGGC TGTCCCAGGA 001920 001921 CGGTTTTACG GTGAGGCATT AGTCGTGTAT TGATTTTCTT CAATCTTCAG TTGAATATTT GTAGTAATTG CTGTTTCAGC 002000 002001 AATGGTGAAC CACATAGCAT TGTCAGAACC TGACTCATTC TGTTTCAtga tggttagtct ctgttggccc tccaaatacg 002080 002081 tctctac |
Predicted Small Protein
Name | NONHSAT090199_smProtein_707:877 |
Length | 57 |
Molecular weight | 6463.4683 |
Aromaticity | 0.160714285714 |
Instability index | 91.2448214286 |
Isoelectric point | 9.30145263672 |
Runs | 11 |
Runs residual | 0.0431303669009 |
Runs probability | 0.0325111207465 |
Amino acid sequence | MLFEILPVFSIPAQSHLLPQPSNLTPFSAMLQTHTAFYPRISYSVPCFFHRRWGSP |
Secondary structure | LEEEEELEEELLLLLLLLLLLLLLLLHHHHHHHHHHLLLLEEEEELLLEEEELLLL |
PRMN | - |
PiMo | - |