NONHSAT133133

From LncRNAWiki
Revision as of 02:29, 17 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT133133

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

3814 nt

Genomic location

chr9-:94035854..94039649

Exon number

1

Exons

94035854..94039649

Genome context

Sequence
000001 CTGGGATTAT TTAGATAGAT TTTCCATTGT TGACAGAGTC TAGCTTTTCT GGAATGAACT GTACATGGTA GTGGTATATT 000080
000081 ATTCTTTCAT GCTAAATTGT AATTCTGGAT TCTGTATATG CTTAAATTGG AATGGTATTT TATGCATCCA TTTTTATAGA 000160
000161 TGAGATTATT AGCCCTTAAC ATTTTAAAAG GTATGTGGAA ATCTTAGTAT TAATTTTTAG AGATAGGGTC TTACCCTGTA 000240
000241 ACCTGGAACT CCTGGGCTCA ACTGATCTTC CCATCTCGGC ATTCCAAGTA GCTGGGATTA CAGGTATGCC CTACCACACC 000320
000321 TGGCTGGTTT TTTAAAAAAA TTTTTGTGGA GATGAGTGTC TTGCTATATT GCCCAGGCTG GTCTTGAGCT CCTGGGCTCA 000400
000401 AACGATTTTC CCACCTCAGC TTCCCAAAGT GCTGGCATTA CAGGTGTTGT ATAATACATT TCTTTTAAGA GGTGATTTTA 000480
000481 TCCCATTTTC ACATTCTTTA CTTGGGGAAG AAAACCACAT GGCAAACATA TTTTATAAAC CCATTGTCTT CCAGACTTGT 000560
000561 TTCTTGTCCT CTATGTTCTA TAAGCTATTG TTCTTGAGTC TTGCCAGTGT ATAAGGTGAC AGGTTTTGTT TCCATGGTGC 000640
000641 TATGTTGTAA GTTCAGTGTT TATGTTTTTC TGTGCATATC ACATAAAGAT CCTTTTTTAA AAAAAGTTTA GTGTTTCAGT 000720
000721 ACTTGCATTT TTCTTTAGAT GTGGCGCTGC AAAGTGAGTC AGTAACCTTT GTTGAGTTTC GAAAAAATAA TGACCTGTTA 000800
000801 CAGTGTTTTG TTCTCGTTTG TTATTGTTTG GAAAAAGAGT CCAAAATAAT TTTATTAAAG TCACATTACT CTGTAGATAG 000880
000881 ACATAGGCCA TATTTTTGAG AATTCACATT AATAACAATT TTGTATATGC AATACTCTTT TTTTTTTTTT TTTTTGGGAG 000960
000961 ACAGGGTCTT ACTCTGTCAT CTGCAGTCTC AGCTCACTGC AACCTCTGCC TCTGGGGTTC AGTGGATTCT TGTGCTTCGC 001040
001041 TTTCTCAAGT AGCTGGGATT ACAGGCGTCC GCCACCACAC CCGGCTAATG TTTTTGCAAT TTTAGTAGAG ATAGGGTTTC 001120
001121 ACCATGTTGG CCAGGCTGGT TTCAAACTCC TGGTCTCAAG TGATCCGCCT GCCTTGGCCT TCCAAAATGC TGAGATTATA 001200
001201 GGCATGAGCC ACCGCGCTCG ACCTGTTCCT AATTTTTTTT TCAAATTTTG AAATGCAGAT AATATTATGT ACCCCATTAG 001280
001281 CTTATGGGGT ACGTAAAGGA AATTTGTATT TGATATTGGC TCTGGTTATT ACTTTTGTCC TTCCATGGAC AATCACTTAA 001360
001361 AACCTTTAAT GCATGAAGCT GTATTTTAGA AAGCTATTTT GGTACTAGTC TCAAAGGATA GATTGCTCTA TCTTTCCCAC 001440
001441 CCTAATGAAA CTAGGTCACT GGCATTTGGC ACATCTCCAT GATGTGAGAT TTGATGTTCA GATGTGCTGT CTAGAAATGA 001520
001521 TAATGCATTG TCAGCAAGAC CACTTTTCAT TTCATCAACA TAATTTCCAC TGCCCTGGAA TCAATTTATT CCTTGACCTG 001600
001601 TTAATAATTA CACTTGATCA CTAGCATTTC AGTGGCAGAG AAAGCCTCTG GAAATGGCCA TAGTCATCCT TTTGGGTGAT 001680
001681 AAGTTATGGG ATTTCTGTTC GGCTTGGAGA TTTGGCCTGT TGAAGTGGTT GACATTTTAT GAAAACAAAG GAGCAAACTT 001760
001761 TTACCTGATG CCGTGTTAAG ATTCGCTCTG TCAAGTGGTT GAGAACACTT ATTTAATTAT CTAACTGTAC TTTTGCATTA 001840
001841 CCTTTTTTTA TGGCCAACTT TAAACATGCC TAGGGAAGTT CCCGTTCTAT TCCCAGCCAG AAGCAAGTGT TTGAAAAATG 001920
001921 AGAAATCACC ATAGAGCTCC TCTAAGATTA ATTTTTCACA GGTCCAAGAA TGCCTAATAT TTAAAATGAG CTACTTTGAA 002000
002001 ATCAGTCATG TATCACATCA GTGTTTCAAA AAGAGATTGA GAAAATATGG GCTGTTACAA AACCACTAAC CTCACCTGTT 002080
002081 GCTCCGTGGT GATTTGGAGC CCTGGAGCAG GGCTGCCTGG ATCTGAAACT TTGCTCTGTG GCCTTTTGGG AAAGTGACTT 002160
002161 GCCTCTCTGT GTTTCTGTCC TAATCCTTAA GTGCAAGAGT GGTCATGCAT ATTTTATAGT GGCATTGGGA GGATGACAGG 002240
002241 AATGAATACA TGTAGAAGGC TTTGAAAGGG TTCTGGTAGA TCACCACCCA GTGTGTGTTG TACTAGTCAT CATTGTTACT 002320
002321 GTAACTTAAT GTGTTTTAGT GTTAATGGAT GTCCTTTTTT CTCTTTTGCT ATCCCAGCCC CTTCCTTGCC TAATTGTTAC 002400
002401 TCTCTTCTGT GTGGTTAGGA GCAACTAGTT CAGTTTAATT TCCCTTAGAG AGCAAGTTTC AGATATAGCA TCATTTTGAA 002480
002481 CTACTAAGGA AGTTTAATTC TCCTAGGATT GGTCATATAG CCTTCTTTAG CAAAATTGAA CAGGAACCTT AGGTGAAGCT 002560
002561 TGGTTAGCCA GGTTTATGGA TCTGGGGCCT TTTCTATGCT TTAATTTTAT ATATTTGACT GTTTAGTAGA TGTTTATCTT 002640
002641 CCTTATCTGA AGTTCACTTT CATCTTGTTG TTGTTAACCT ACATAAAGAT TTATTTAATG TGGATTAAGT CCTCTGTTAT 002720
002721 TTAGAAATAT AAATTGAGTT GCCAATCTGA TATTTACTTT CTCAATTTTT ATACACTTGA CTTTGCAGTT ATACATTTTT 002800
002801 TGCTAATTAT TCATAAGGCT TACAACTACT ACTAGTAATT CAACAGAAAA TAAGTACTGT ATTGTAAAAT CCTAAAGGAT 002880
002881 TTGAGTTTTT AATTCAAGTA TATTAAGAAC ACATCCTTAG GTATTGAAAT AAGAACCTTA TAACATCCTG TCATCTTCCA 002960
002961 GTTTGCAGTT TCACCTCTTT GCTAGTGCTG ATGAGGTCAT TGATGTGTCA TCATAACACT CTGAGTGCCA GTAGGGAAGG 003040
003041 AACTGTTTCA TTTGATTGAC TACTGTATTA ACAGTATCTA GCCCATTGCT CATTACATGA TAGGTGCTTA GTAAATATTT 003120
003121 GTTAAATGAA ATAAAATGAT TTTCTCTATA TTTTGTATTT TCTAGGATTT TTAGGAGGCA TACCCAGAAA ATAGGCTTAT 003200
003201 ATATTTTTTT TGGATTTGTT TCTGCTAATA ATCAGTATGC TTTGCACGTT TGTATTCTGT TTCCATTTCT TTTGTTGCTG 003280
003281 TAGTTTGCTT TTCAATAGGC ACAGTTTCAG TACCTGTTTC CCTGCCCTAC ATAACACCTT GAGAGAGACC TTCTCTTGTG 003360
003361 TGCCCGTTAT TTTTAATCCT TAGACTCAAA AGAACAGATT GTCTTTCTTA AATTCAAATA TACCTGGTCA GCCCCTTTTC 003440
003441 CACCTCTGAG AAGAGAGAAA AGAAAGTATA TTAAGATTCT GGAATTATTT GTGTTTTATG GCTGTGCAGA ATTAAAGTGG 003520
003521 CAAAAATTGT TCGTCAAAGA GCTCAGATCC TTTTAAGATG CAAACCACTG AATTTGTTTG TCAGTGATTG CTCTGGAACT 003600
003601 GGAGGTATCC CCCTGCCAAT GCCTGGTTTG GGGGCCACTG TGTAATTATT TTTTACTGAT TTGCCTCATG AATGTACACA 003680
003681 TATGCATGTT ATTTTTGATG CCTTAAAAAC ATCTGTTATA AAGACAGAGG GTTTTAAATA CTTCAATTTG GTACCTTTAT 003760
003761 TTTGAGCGAC CTTAAATAAA TGTAACATTT TCAATGCCAA AAAAAAAAAA AAAA
[back to top]

Predicted Small Protein

Name NONHSAT133133_smProtein_3236:3382
Length 49
Molecular weight 5629.6476
Aromaticity 0.208333333333
Instability index 51.425
Isoelectric point 7.60333251953
Runs 11
Runs residual 0.0635964912281
Runs probability 0.032840326958
Amino acid sequence MLCTFVFCFHFFCCCSLLFNRHSFSTCFPALHNTLRETFSCVPVIFNP
Secondary structure LEEEEEEEEEEELLEELLLLLLLLLLLLHHHHLHHHHHLLEEEEEELL
PRMN LLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo ooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiii