NONHSAT039229
Revision as of 21:44, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT039229 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1757 nt |
Genomic location |
chr14+:90922005..90925295 |
Exon number |
2 |
Exons |
90922005..90923502,90924940..90925295 |
Genome context |
|
Sequence |
000001 GTCCCAGTGG GACCAGGGTG AGGGTGCAGG TATCTGAGGG AGTAGTAGGA CCAGAACCTC TAACCTTAGG GAGGCTTCCT 000080
000081 GGGAGCCAAG CTTGGTGACT TAGAATGTGA ATGTCTGACC CATATCCCAC TACCTTTTGG TGGGTGCTGC AGAGGACAAT 000160 000161 GGAGAGAGAG TCAACTCTGA AGAGTGGTCT TGTGGAAGAG GCAGCTGGCT GGTTCAGTGT GGCACTGGCA GCCTCCCTAA 000240 000241 GGTTCCCAGG TAGAAGTTTC TGACAGGTAG ATTTCAGCTG TGTTTAAGGA AGAACTTTGA AGTTGTCAGA ATGAGCGGTC 000320 000321 TTGTGATAGT GAGCTCCCTG TCTCCAGAGG CATGCAAGCA GGACACTTTC ACATATGCAT TCAAGATGAC CTATGCAAGG 000400 000401 CGTTGTGCTA AGTGCTAGGA GTGCAGAGGA GAACGAGACC CAGTGGGGAA ACAGGCACTT GCAATGCTGC TGTGAGTGTG 000480 000481 AGCAGAGGTC AGCGTGGGCA TCTGGAGCAC AGGGAGGGAG TCCTGAAGGC TGGGTTGAGG ATGAGGATAC AGCTCATTGC 000560 000561 TGAGCCTTAT GGTGAACCAG AAGTTTACCA GGCAGACAGG AGCTGGGGAG AGGGCTGGCA TTCGTCCATT CAGGTTATGT 000640 000641 TTTCTGAATT ATATATAGAA GGACATGTTG CAGAAGAAAT GCAAGTACAG TGAAGAATAA GACTGGGGAA CTTTTACAAT 000720 000721 TCAGAGTGGC CTTCACTGTG GGCGGTCCGA ATTGATCCCT GTATACAGGT GCTTCTGGGG TGACATTTTC CCTGCTCCAT 000800 000801 GGAGCTCCGG GAGGAGTGCG GACCAACCCC TTCTTTGCAG GCCTGTCTGT GGGGTGCCAC TCCTCCTCCC ACCTCCCCAC 000880 000881 TGCACAGACA GCCCATCAGT GTCCCTGAGC TGCTCCAGAA GGATGCAGCT CTGAGGAGGC TCTGGGAGCG GTGTATCCTA 000960 000961 GCAACCTCTG AGGCTGGCAT CTGCAGGGCT AGGCCCAGAC TCAAGGCTCT TTCTAATTTG CCAGCCTTCC CTTAATGATA 001040 001041 AGCTTTCCCA CACGGATGTG GAGTGGGGAG GAAGAGGGGA GAAGTGGGCA GGAAGTGTTG CCTCCAACCC CATCACAGAG 001120 001121 TAGGTCAAGC CTCGCCCACA ATACTGCCGG GGATGGGGAA GGAGGGAGGG CACAGTGAGT CCGTTAACTG AATATGCCAC 001200 001201 TTGTCCATCA CCGTGGCCGG TTTATCACCA TTTAGAGGAC AATGAATCCA GGCAGTGATC CACCAATGAT AACTAACATC 001280 001281 ATAAAAAGAT ACATGGCCGG ATATGATGTT CCTTCTGACG GAAGACCACA ACACCTGCTG AAAAATCAAA TCTGAATCGG 001360 001361 ATCAAGCCTC TAGAGGAGGC AGCACCCAGG GTCATTCCTG GAGCATAAAC GATCCCTGCA GAACATGGGC TAGAAGACCC 001440 001441 CACAGTGGGG CAGAGGCAGG TCCTGGACTG GGATCCCAGC AGTGAGAAGA CCTGGACATC AACCCTATTT CATTGTGCCT 001520 001521 CTGCAAATCT CCCAACTTTT GGAGCTGTAG CTGCAAGCTC AGACTTGTGG TTTCCTGTAC CTGGAGGAGG CCCAGGTCAT 001600 001601 TCTGTTAAGT CCCTTGTCTA TTTCCTGCTT TTATCTGGAT GCTGAGTTAA TTATTTGATC CAACAATAAA ACTAACAAGG 001680 001681 TTTTATTTGT TTTTAATGTC TTCTCTTTGC TGAACGCTGT GCTGGGTGCT GTAGCTGACA TGGTTTTTGT CTTAACA |
Predicted Small Protein
Name | NONHSAT039229_smProtein_392:562 |
Length | 57 |
Molecular weight | 6125.5221 |
Aromaticity | 0.0535714285714 |
Instability index | 56.7946428571 |
Isoelectric point | 4.38616943359 |
Runs | 10 |
Runs residual | 0.0252732240437 |
Runs probability | 0.0488341282459 |
Amino acid sequence | MQGVVLSARSAEENETQWGNRHLQCCCECEQRSAWASGAQGGSPEGWVEDEDTAHC |
Secondary structure | LLEEEEEELLHHHHLLLLLLLLLEEEEEEEEEEHHHLLLLLLLLLLLELLLLLLLL |
PRMN | - |
PiMo | - |