NONHSAT039229

From LncRNAWiki
Revision as of 21:44, 16 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT039229

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1757 nt

Genomic location

chr14+:90922005..90925295

Exon number

2

Exons

90922005..90923502,90924940..90925295

Genome context

Sequence
000001 GTCCCAGTGG GACCAGGGTG AGGGTGCAGG TATCTGAGGG AGTAGTAGGA CCAGAACCTC TAACCTTAGG GAGGCTTCCT 000080
000081 GGGAGCCAAG CTTGGTGACT TAGAATGTGA ATGTCTGACC CATATCCCAC TACCTTTTGG TGGGTGCTGC AGAGGACAAT 000160
000161 GGAGAGAGAG TCAACTCTGA AGAGTGGTCT TGTGGAAGAG GCAGCTGGCT GGTTCAGTGT GGCACTGGCA GCCTCCCTAA 000240
000241 GGTTCCCAGG TAGAAGTTTC TGACAGGTAG ATTTCAGCTG TGTTTAAGGA AGAACTTTGA AGTTGTCAGA ATGAGCGGTC 000320
000321 TTGTGATAGT GAGCTCCCTG TCTCCAGAGG CATGCAAGCA GGACACTTTC ACATATGCAT TCAAGATGAC CTATGCAAGG 000400
000401 CGTTGTGCTA AGTGCTAGGA GTGCAGAGGA GAACGAGACC CAGTGGGGAA ACAGGCACTT GCAATGCTGC TGTGAGTGTG 000480
000481 AGCAGAGGTC AGCGTGGGCA TCTGGAGCAC AGGGAGGGAG TCCTGAAGGC TGGGTTGAGG ATGAGGATAC AGCTCATTGC 000560
000561 TGAGCCTTAT GGTGAACCAG AAGTTTACCA GGCAGACAGG AGCTGGGGAG AGGGCTGGCA TTCGTCCATT CAGGTTATGT 000640
000641 TTTCTGAATT ATATATAGAA GGACATGTTG CAGAAGAAAT GCAAGTACAG TGAAGAATAA GACTGGGGAA CTTTTACAAT 000720
000721 TCAGAGTGGC CTTCACTGTG GGCGGTCCGA ATTGATCCCT GTATACAGGT GCTTCTGGGG TGACATTTTC CCTGCTCCAT 000800
000801 GGAGCTCCGG GAGGAGTGCG GACCAACCCC TTCTTTGCAG GCCTGTCTGT GGGGTGCCAC TCCTCCTCCC ACCTCCCCAC 000880
000881 TGCACAGACA GCCCATCAGT GTCCCTGAGC TGCTCCAGAA GGATGCAGCT CTGAGGAGGC TCTGGGAGCG GTGTATCCTA 000960
000961 GCAACCTCTG AGGCTGGCAT CTGCAGGGCT AGGCCCAGAC TCAAGGCTCT TTCTAATTTG CCAGCCTTCC CTTAATGATA 001040
001041 AGCTTTCCCA CACGGATGTG GAGTGGGGAG GAAGAGGGGA GAAGTGGGCA GGAAGTGTTG CCTCCAACCC CATCACAGAG 001120
001121 TAGGTCAAGC CTCGCCCACA ATACTGCCGG GGATGGGGAA GGAGGGAGGG CACAGTGAGT CCGTTAACTG AATATGCCAC 001200
001201 TTGTCCATCA CCGTGGCCGG TTTATCACCA TTTAGAGGAC AATGAATCCA GGCAGTGATC CACCAATGAT AACTAACATC 001280
001281 ATAAAAAGAT ACATGGCCGG ATATGATGTT CCTTCTGACG GAAGACCACA ACACCTGCTG AAAAATCAAA TCTGAATCGG 001360
001361 ATCAAGCCTC TAGAGGAGGC AGCACCCAGG GTCATTCCTG GAGCATAAAC GATCCCTGCA GAACATGGGC TAGAAGACCC 001440
001441 CACAGTGGGG CAGAGGCAGG TCCTGGACTG GGATCCCAGC AGTGAGAAGA CCTGGACATC AACCCTATTT CATTGTGCCT 001520
001521 CTGCAAATCT CCCAACTTTT GGAGCTGTAG CTGCAAGCTC AGACTTGTGG TTTCCTGTAC CTGGAGGAGG CCCAGGTCAT 001600
001601 TCTGTTAAGT CCCTTGTCTA TTTCCTGCTT TTATCTGGAT GCTGAGTTAA TTATTTGATC CAACAATAAA ACTAACAAGG 001680
001681 TTTTATTTGT TTTTAATGTC TTCTCTTTGC TGAACGCTGT GCTGGGTGCT GTAGCTGACA TGGTTTTTGT CTTAACA
[back to top]

Predicted Small Protein

Name NONHSAT039229_smProtein_392:562
Length 57
Molecular weight 6125.5221
Aromaticity 0.0535714285714
Instability index 56.7946428571
Isoelectric point 4.38616943359
Runs 10
Runs residual 0.0252732240437
Runs probability 0.0488341282459
Amino acid sequence MQGVVLSARSAEENETQWGNRHLQCCCECEQRSAWASGAQGGSPEGWVEDEDTAHC
Secondary structure LLEEEEEELLHHHHLLLLLLLLLEEEEEEEEEEHHHLLLLLLLLLLLELLLLLLLL
PRMN -
PiMo -