NONHSAT133710

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT133710

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

2144 nt

Genomic location

chr9+:102902688..102904291

Exon number

1

Exons

102902688..102904291

Genome context

Sequence
000001 TTTGAGCCAG GATGAGCCAG GAGAAGGAAT TTCACAAGAT AATGTCATCA GTTAAGGCAA GAATAGGCCA TTTTCATTTC 000080
000081 TTTTGTGGTG GAATGTCATC AGTTAAGGCA GGAACCGGCC ATCTGGATGT GTACGTGTAG GTCACAGGAG ATATGATGGC 000160
000161 TTAGCTTGGG CTCAGAGGCC TGACATTCCT GTCTTCTTAT ATTAATAAGA AAAATAAAAC AAAATAGTGG TGAAGTGTTG 000240
000241 GGACAGCGAA AATTTTGGGG GATGGTACGG AGAGATAATG GGCGATGTTT CTTAGGGCTG CTTCGAGCGG AATTAGGGGC 000320
000321 GGTGTGGGAA CCTAGAATGG GAGAGATTAA GCTGAAGGAA GATTTTGTGG TAAGGGGTGA TATTGTGGGA CTGTTAGGAG 000400
000401 AAACGTTCGT CATTTAGAAT TACTGGTGAT GGCCTAGATA CGGTTTTGTA TGAATTGAAA AACTAAATGG AATAAGAGAA 000480
000481 GGAGAAAAAC AGGTATTAAA GGACTAAGAA TTGGGAGGAC CTAGGACATT TAATTAGAGA GTGCCTAAGG AGGTTCAGCA 000560
000561 TAGTTCTGCC AGCAAAGATT ATTTATTTAC TTCAAGAGTT AAGAGTGGCA GTTTGGGGAT AGCTCCAGGA GATATCAGCT 000640
000641 GTGATGGCTT GGAGAAACAG TGTAAACCAG CAGTGTAAAC AAGAGCAGGG CATGTGTGAG TAGTTGAGAA CAGTGAATAG 000720
000721 GAGTATGATT AGACAGAAGA TAGTAGGGAT GACAAGTTTT TTGGGGCACA GTCCAAGTTG GTCTTGGAAT GATACTGGGG 000800
000801 CCTAATAAAA AGGAGCATCT ATACAGGAGC TTAAATGAGC TGTACCTTGT AACATTCTGA GGACAGGCCT GAATTCTGAG 000880
000881 AAGGGAAAGT GGTAAAAGTA TTGTCTAGTC CTTTTTAAGT TGGTGGCTGA GCTTGGTGAG GTGTGTTTTT AAAAGACCGT 000960
000961 TAGTCCATTC TACCTTTCCT GAAGACTGAG GACCGTAAGG GAAATAAAGG TTTCACTGAA TACCAAGAGC CTGAAAAAAT 001040
001041 GCTTGGCTGA TTTGACTAAT AAAGGCCGGT CTGCTATCAG ACTGTATAGA GGTGGGAAGG CCAAACCGAG GAATTATGTC 001120
001121 TAACAGAAGG GAAAAAATGA CCGCGGTGGC CTTCTCAGAC CCTGTAGGAA AGGCCTCTAC CCATCCAGTG AAAGCGTCTA 001200
001201 CCTAGACTAA GAGGTATTTT AGTTTTCTGA CTCGGGGCAC GTGAGTAAAG TCAACTTGCC AGTCCTGGGC AGGGGCAAAT 001280
001281 CTCCGAGCTT GATATGTAGG AAAGGGAGGA GGCCTGAACA ATCCCTGAGG GGTAGTAGAA TAGCAAATGG AACACTGAGA 001360
001361 AGTGATTTCT TTGAGGATAG ATTTCCAGGA TGGAAAGGAA ATGAGAGGTT CTAAGAGACG GGCTAGCGGC TTGTAACCTA 001440
001441 CATGGAAGAG GTTATGAAAT GACGACAGAA TAGAATGGGC CTGTGAGGCT GGAAGGAGAT ATTTTCCTTG GTCTAAGAAC 001520
001521 CATTTGCCTT CTGTGGGAAG AGATTGATAG GTGGAAGTTT CAGTGGGGGA GTAGGTGGGA GTGACTGACG TGAAGGAGAA 001600
001601 AAACAATGAC TAATCAAACT AACCTCAAAA CAAATGATAA CCATACACAA CACTAAAGGA CGAACCTGAT CTCTTATACT 001680
001681 AGTATCCTTA ATCATTTTTA TTGCCACAAC TAACCTCCTC GGACTCCTGC CTCACTCATT TACACCAACC ACCCAACTAT 001760
001761 CTATAAACCT AGCCATGGCC ATCCCCTTAT GAGCGGGCGC AGTGATTATA GGCTTTCGCT CTAAGATTAA AAATGCCCTA 001840
001841 GCCCACTTCT TACCACAAGG CACACCTACA CCCCTTATCC CCATACTAGT TATTATCGAA ACCATCAGCC TACTCATTCA 001920
001921 ACCAATAGCC CTGGCCGTAC GCCTAACCGC TAACATTACT GCAGGCCACC TACTCATGCA CCTAATTGGA AACGCCACCC 002000
002001 TAGCAATATC AACCATTAAC CTTCCCTCTA CACTTATCAT CTTCACAATT CTAATTCTAC TGACTATCCT AGAAATCGCT 002080
002081 GTCGCCTTAA TCCAAGCCTA CGTTTTCACA CTTCTAGTAA GCCTCTACCT GCACGACAAC ACAT
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Predicted Small Protein

Name NONHSAT133710_smProtein_11:139
Length 43
Molecular weight 4685.3908
Aromaticity 0.119047619048
Instability index 53.8976190476
Isoelectric point 9.03656005859
Runs 9
Runs residual 0.038125376733
Runs probability 0.0344952795934
Amino acid sequence MSQEKEFHKIMSSVKARIGHFHFFCGGMSSVKAGTGHLDVYV
Secondary structure LLHHHHHHHHHHHHHHLLLEEEEELLLLEEEELLLLEEEEEL<