NONHSAT133724
Revision as of 02:31, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT133724 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1086 nt |
Genomic location |
chr9+:103947317..103950308 |
Exon number |
3 |
Exons |
103947317..103947537,103947732..103947839,103949552..103950308 |
Genome context |
|
Sequence |
000001 AATTCTCTAG GTTGCAAATT GGGAGGATTA GGAACAAGTA AGAGAGATCC ATGCAGGATG GACAAGAAAA AAAAGTTTTA 000080
000081 TACCAAAAAT TGTATTTCAT GGCATTAGGG CAGTCTACTG GGGTAAGGCA CTATGCAGTA CTAGGCAATT AGAATTCTAT 000160 000161 TCACTAGCTA TGTGCACAAG CGGCTCCTGA CCTGGTCATT TTGGCTGTAA AACTATTCAT GCCTGGACAG TTTTTGACGG 000240 000241 TGCAGTCTTG CTATATGGTG TGAGAAATGG CTGTAGGAAA CAACACTCAA CGAAGTTATT CCATCATCCC GTGTTTTATA 000320 000321 TTTGTTGAGG AGGAAGCAAC CCTCAAAGTG AGATGTTTAA TTTATTGCTG GAAGCTGTAG TCTCCGAAGA TTTTCAGCTC 000400 000401 TCTAATGTGT GAATGAAGAG CTTGGCCGGT GGAGCAGCAA CAAAGGAGAT AAATTAGTTC TTCTGTAGCT TACCCTGACA 000480 000481 CAAACATAAA TAGAAGTCTA AAAATCTGGG AGAGGAAAGA TGGTTTATTC TTTTTCTTGT TGTATTGTTG TTCTTATTTT 000560 000561 GCATGGAAAT TCTCTTAGAA CTGTCTTAGA AATAGGCAGG CAAAAGGGAA GGGAAGTAGG ACACAGAAGA CATTGAGTGG 000640 000641 GAAGGAGGTG AATCTCAAAG TGGCTCTCAT GATTCTCATG TATttcattc accaaacact tattgtttac ctatattatt 000720 000721 ccaggtacta taacaaggat atcacaaaac ttggtAAAAA ATGTCAACTT GACCAATGAA TATCTTTTCA CTGTTTTTTT 000800 000801 AATTATGAAA GAATTTAATC ACAGAAAATA ACTGACATCC CTGCACCTAC CATCAAGACA AAATCTTAAA GTTTTGTCAT 000880 000881 ATTTGCTTCA AATATTTTTG TCAAGGAAAA TAAAATGTTA CAGATATGGC CAAAATCCTA TTGTCCTGAA GCCAGAAGTC 000960 000961 ATTATATGTA TGAAGTTTGG GGCTTCTTTT CCCTACATGT ttcccatgca tggtttatat tttcctacat atgtatatat 001040 001041 tcataaatat tttaggaaaa ttttacataa atgacactat gctgaa |
Predicted Small Protein
Name | NONHSAT133724_smProtein_914:1045 |
Length | 44 |
Molecular weight | 5325.126 |
Aromaticity | 0.279069767442 |
Instability index | 57.8674418605 |
Isoelectric point | 6.80047607422 |
Runs | 4 |
Runs residual | 0.0642801149726 |
Runs probability | 0.0440734852501 |
Amino acid sequence | MLQIWPKSYCPEARSHYMYEVWGFFSLHVSHAWFIFSYICIYS |
Secondary structure | LLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTo |