NONHSAT135716

From LncRNAWiki
Revision as of 02:38, 17 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT135716

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1056 nt

Genomic location

chr9+:140145713..140147935

Exon number

5

Exons

140145713..140145848,140146190..140146347,140146889..140146977,140147114..140147417,140147567..140147935

Genome context

Sequence
000001 TTGGGGAAGA GAGCCAGGAG ACTCTGATGA TGAATTCTGA CCAGAAGGCA GTGAAATTCC TGGCAAATTT TTACATCAAT 000080
000081 GGAGGCAAAC ACTGGACCCA TGGTCACCTG AGGCAGACAC AACCAGAGCC CACCCAGCCC AAGGCATCTG TGCTGTTGTT 000160
000161 GGGCCCGGAG CCGGGGATGG CCTGGGATGA GACACAGCCC CCAAAGATGA AGGAGATCCC AGTTGGCCTC AGGTTACAGA 000240
000241 CGGGCACCCC CCAGGAGTCC CTGCCCACCT ACACCCAGAC CCTGAGGGAA CTATAGGGCG GTGGCCGCAG GGCATGGCAG 000320
000321 ACTTTGTGGT TCCAGAGCGA AAGCCCCTTC ACGCAGAAAG CTGACTTCGA CCAAGAGCAA AAGTGGCCCT CGCCAGCCCA 000400
000401 CTACCAGCTG CTCAGCCGGC CCGCCTTCCC CGCCTTCAGC TTCAGAGGCT GCCACTCCGC TTCCAAGACA CCTGAAGGCC 000480
000481 ACACCCACCT AGGGCTGCCT GGGGCTAGGG GGCTGGGCCT CAGGGTGCAG CCCCAGTCCC TGCTTCAGGC CTCTTTGCAG 000560
000561 GCACCTGGCA AGAGATGCCC TGGCCCCAAC ACCTACAATA TCCTTCCTGG GAGCCGCCTG CAGAGCCCCC GCTCGCCGGC 000640
000641 CTTCTCGATG AGCCGCTCCC CTGCGTTCAC CTCCTGGCTC AGCACCTCCC GAACCCCTGG CCCAGCCGCC TACCACGTGG 000720
000721 AGGACTGCAA CTCACGCTTC CCTTCGGCGC CTGGCGTGGT CATCCAGGGT GTACGCAGAC CCAAGCGCCA CGACACAGGC 000800
000801 CCCTTCTGCA CGCTCTAGAG CCAGCTGGGC ACAACCTGCT TGGCCCGGCC ACCGAGTGGA ACCATGGCCT CCCCCGGGGC 000880
000881 TTTCCCAGGC CTCCCCTGGG ACTTGGGGCC CCAGCCTGGC CTTCTGACCC TCTGGGCACC CCGATGCACC CTTCTGGCTG 000960
000961 GCCAACCCTT CTATGGGCTG TGGACAAGGC TGGCCCAGCC TGGATCCCCC ATCTGCCCAT CTCCCCGCTA CACTGAGATG 001040
001041 CTGTTGGTTT TCCCGA
[back to top]

Predicted Small Protein

Name NONHSAT135716_smProtein_26:295
Length 90
Molecular weight 10038.396
Aromaticity 0.0674157303371
Instability index 46.4956179775
Isoelectric point 8.09515380859
Runs 9
Runs residual 0.0420797532496
Runs probability 0.0432491314844
Amino acid sequence MMNSDQKAVKFLANFYINGGKHWTHGHLRQTQPEPTQPKASVLLLGPEPGMAWDETQPPK
MKEIPVGLRLQTGTPQESLPTYTQTLREL
Secondary structure LLLHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLEEEEEELLLLLLLLLLLLLLL
LEEEEEEEEELLLLLLLLLLHHHHHHHHL
PRMN -
PiMo -