NONHSAT093551
Revision as of 00:47, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT093551 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3590 nt |
Genomic location |
chr3+:181722797..181726386 |
Exon number |
1 |
Exons |
181722797..181726386 |
Genome context |
|
Sequence |
000001 GGGTGGAATT TATGGCCCTA GATATGAAGC TTGGAGATGA CTGAAGTGAT AGATGACTCC AAGGATAATC AATAGCCATG 000080
000081 AGAGTTATGG CTTATTGAAA GCTTACTATT TCTTGGGAGA GTGCAATGTT ATCATCTCCT TAAATTCTAC TGCAAGTCGT 000160 000161 CAGGTTTCTG CAGCTGGGAT TTAAGCCCAA TTCTGCCTGA AGCCAAAACT TGTGTTCTCT TTCACTGTTG TCTCCTAAGA 000240 000241 CAATTGGTTG TGAGGTAGAA AAAGAACTGG ATAATCCTCA AAATGGAAAA TTAAAAAGAT GAAACTAAAT TGGGGTCATG 000320 000321 GGTTGAGACA ATACAGTGAG AGACACTGGA ATTGGAAGAA ATGAGGCATG AGGCCAGAGT GGAGCTCCCT TAGGACAATG 000400 000401 CTTTTGGCTT CTGGAGCCTT TATTACAATG AGGCAGCTCA GGACTTACAG TGTTCATCTG AGTGCCGGGA ATCGTACTGT 000480 000481 CATGGTGCTT CTCATGGCTT TTTCATCTTG CTTTGTGTTA TAGGGCTTTG GGTTCACAAG CTCTCTGAAG GAGCTGACTG 000560 000561 TGAAGGCAAG GACTGTGTCT ATGCCTTTTT TAAGGAGACG CACAGTTTGT CTTAACCAAG TGGACACATG AGAGGCACAG 000640 000641 AGAGGGGTGC ACCTCAGTCT ACCCAAGGAT ATGGAGTGGG GGCTTTATGG AGACCTGAGG GGCCCAGGCA CAGAAAAGAG 000720 000721 ACAAAGTGAG GGAACACTTG AGGCAGATGG CAGGGCACAT GCTTAGGGAG GAAAGCTTGG AAAGGCACAG GCAGAGTGTT 000800 000801 TAAGGATGTG CCCAGCATGT AATCTAGAGA AAGCAGTCAG AGGAAATGAG ACTGGAGAGG CAGCTCGAGG CAGGGCATAT 000880 000881 ATGTGAAAGT CACTCGCACC CCCTCTTATC ATATGACTCC AGGCAGTCCT CCAACCCGTC CTCCAACCCA CCCACTCGAG 000960 000961 CTTCCTGCCT TCTGACAGGT TTCCTTATTT CTGAGCCTCT CGTAACAGGC CCAGTATATC CTTCCTTGCT CATGTAAAGA 001040 001041 ATTCCACTCA TCTTTCAAGA CATTTTAAAC AGAAGTCCTG TGAGGCCTGC CTTGAGACAC TCACACTCAA TTTACTTTCT 001120 001121 TCAGAAGTGT CTTTTCTACT TCTCTGTTCT AGCACAGCCA CAATGTTTCA TCTGTTTCCC CTACTATTGT GAGGGCTTCT 001200 001201 TCCACAAGAA GAATTTTGTC TTCTCTTTGC ACCCCCATTA CCAGCACATA GTAAGCGCTC AGCACATTTG ATAATGGAAT 001280 001281 GGCTCTGATT TTACATTCCT GTATTTTTCC GGCAGATAGT GAGTAGTCAG CGGGGACTCA TGCATGACTC TGGGAAAAGT 001360 001361 AGAGGGTAAT TTTTTTATTT GCTTTTCGAG GGCTGATCAG GGCTCCTTAT TTTTATGGCG GCCAGCATCC TGCTCACCCT 001440 001441 GACTCCCTCC AGCTTCTGGT ACCTGCATAT CCAGGCTATG TTAATTTCCC TGCATTTTTC CTCTTTGTCA CTTTTTCTTT 001520 001521 TTTTTCTTCA AAGAGCGTCG CAATCTCTCA GGAGTTTGAT TATATTGCAA GATGAATAGG ATATTTGAAT TATGCTATTT 001600 001601 AAATGAGTCA TCTCAACCCT AGTGTAATTG TTCACCCCCT GTCACACTAA ACGTGACCTA CATTTTTAAA AGAGTGCTTT 001680 001681 TGGCCTGAAT AGAGGATTGC TGAAATTGTT GGGTTCCAGT TCTCAGCAAT TTATCATTTG TTATCACCGA GTGTGTCTTT 001760 001761 TGTTTCACAT CTGGGCAGAT GTGAACTTTT AAAACTGTCT CTCACTAGAC CTATCAAAAG AAGCTGCTTT TATTTGCAAA 001840 001841 AAGAAGGTGA ACTGATTTCC TGGGTGTTTA TGTGTGTGTG GTATGTGGAG GGGCACAGAG GAGCAGCAGA GTTCATTAAA 001920 001921 CAGAAGATGT CTGGTCTTGG CTAAGCAGTT TAAAAACATA TAGGAGTACT TATGCTGAAT TGATTCACAT TTTGGTTCTG 002000 002001 TGGCCTGAAA CTTGCTTGTT TCACCCTTCT TTTTTGAGAG TTTTGGTTGC TCTAAAACTA AGCCTGTATT AATGCTCTTG 002080 002081 AGATGGATCA ACTGGGGAGC CCTGTCATGC CTTACCATTT TTTCATCTTG GAGTCAAGCT GCAGGACAGG ATTCTTATAC 002160 002161 TGCCCAAATG ATTGGAGGCA CATTTCCCTC CATTGTCCAT TTCTTTGACA GGCTGTGAAA CATAACTAAC TCCAAAGCCA 002240 002241 CCTATCAAAG TTCATGAAGG TTTTAGTTAG GAACTGGTGG TTTTGTTGTT ACAGATACTT CAGTTATTCA GACTGTGAAT 002320 002321 TTGAGTCACA GCCTACTAGG CAAGGCCCAT ACTGAGATAC AAAGGAACTG AACTTTCTAA ATTAGAGGTG AGCAGCATTT 002400 002401 CTGAAGTGAT AGATAAGGTC CTTGTACTAC ATTCATTCAG CAGATATTGA TTGTGTGCCC ATGAATCAGG CATATGTGTA 002480 002481 GGGCGTTAAT ACAAAAGAAA CTGGCCCCTA CCCTCAAGAA GTTCACAGTC TAGTGAGGTT GACAGGCATG CAGATGATAA 002560 002561 CATAATGGAG GCATGCAAGA AATGCTGTGG AAAATTAAGA CAGCACAGTC TGCCTGAGGA GAGTGGTCAA CGTTTAATAG 002640 002641 AGGAGGATGT GCTTGTGTTG GAACTTGTAG GATGAGTAAT GGTGAAGGCA AAGGCTACTG TGGCTAGAGT CTAGTGCACG 002720 002721 ATGATGGAGA TGAGGTGGTC AGAACACGAG GGTTCTTGTA TGTCAAAGTA TGCTAGTTTT ACACCATACA TTTATTATTA 002800 002801 TGAATTCAGC TGCGAGGAAC AGAAATCTGC AATTCAACTG GCTTAAACAC TGAGGAAAAT TTATTAGCAC ATGTAATATG 002880 002881 TTCAAAGGCA GTTCCAGGAT GACTGAATTC AGTGGCTCGA CTCTGTCATT AAGGACTTAG GTTCTTTCCA TTTTTTTTGC 002960 002961 TCTGCCATCC TTGGTATGAT GGTTTGCTCT CAGACTTGCT CTTCTCCTGA TCGCAAGGTG ACCAAAGAGG AAGAGAGATT 003040 003041 TGTTTCTTTG TTTTTGAGGT TTGTTGGTGT TTGTTTTGTC TTGATTTGTG TCTTTTCAAT CAGTAAGGAA AATCTTTCCT 003120 003121 AAGGAGCTCT CCTGCCACTC CCATCAGACT CATCCTCATG CCTCAGTGGC CAAAAGTGCA TCACGTGCCC AATCCTAAAC 003200 003201 CATTCACTGG CAAGGGGAAT GCAACCACCA TTACTGGCTC AGACCAATCT TGATTCACTC CCTGGAAGAA CTGTCCCACT 003280 003281 TCTTCTGGAT TATATGGCCC AGGTAGAGGA TACTGGAACA AAATTGGGTT TCCGATAGAG AGTAGGAGAA AGGGAGACAA 003360 003361 TTGATTGCTG AGTTGGCAAC CAACAGCATT TGCTATGGTA GATGATGAGA AACCAGTATA GATAATTGAG CAGGAGTGGC 003440 003441 ATGATCAGTT ATGTTTAAAA AAAGTCCTAT CAGAAATGTA GAGTTGAGCT TAATAGACAG AAAAATTGAG AACACATGGA 003520 003521 ATAGTCTTGT GAGCAGCCAA GGAACTGATC AACACACATG TGGAACTGGA GCTGAAACTT TTCTGGAGTC |
Predicted Small Protein
Name | NONHSAT093551_smProtein_845:1036 |
Length | 64 |
Molecular weight | 6922.8123 |
Aromaticity | 0.047619047619 |
Instability index | 69.6746031746 |
Isoelectric point | 6.23236083984 |
Runs | 9 |
Runs residual | 0.00210560414642 |
Runs probability | 0.0129050619247 |
Amino acid sequence | MRLERQLEAGHICESHSHPLLSYDSRQSSNPSSNPPTRASCLLTGFLISEPLVTGPVYPS LLM |
Secondary structure | LLHHHHHHLLLEELLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLEEEELLLLLLLLLLL LLL |
PRMN | - |
PiMo | - |