NONHSAT021253

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT021253

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1917 nt

Genomic location

chr11-:47491883..47574688

Exon number

2

Exons

47491883..47493654,47574544..47574688

Genome context

Sequence
000001 TGGGGTGTTC TGCTCTggcg gcagcggcag cggcggcggg acgcggaggc tcccccggga ttcggcctca gcagcgaggc 000080
000081 ggcggcggcg gctgcggagg cgcaggcagc aactgaggca gcggcagGCT CAGGTGCAGC CGCTGGCACA GCTTGCCCTG 000160
000161 AAGACTCGGC TACTGCCTTC TGTGGGAGTT TCGCTTCGTA CAGAGGACAA GTTTGTGCTT TGGTTTCCAG TGTTTTACTT 000240
000241 TGGAGTTTAG GTGCCATATC CTGAGGTTTt ttttgttttt gtttttgttt CTCCTTTATT TAAAGTTTGC TGTGTTTGTA 000320
000321 ACCAGTGTGT GTTGAGAAGG ACCAACACCA AACCACCCTG GGGAAGGGGG ACAGGGAAAC ATTTAACACA GACGATGATC 000400
000401 AGGATTTGCC CCAAACCACC CCAAGAGAGA GGACTGAGTG GAACAAAAAA GTGACCCCCA GAACCTCTCT TAGTGTGAGG 000480
000481 GTGGGTAGAA TGAGAACTGA CACCTGGGAG CTGTGGGGAG CAGAGCGGCT TTGGGGAAGA GTGGAGTGAC TAGACACCTA 000560
000561 ATGCCCTGGC AGCTGGAGAC TCAAACTCCT GTACAGCTAC CTTCTGGGAA ATAGTTTTTG ACACCTATTT TTCAGATTCT 000640
000641 TGTCCGGAAT TTCTGCTGCT CTTTTCAAAA AAGGGCATTA ACAATTCTCT GGAAATAAAG CACCTGTTAG CCTGACATAT 000720
000721 GCAAAAAGCA GGGCGGCATC ACCCATTACG AGCTCCCCCA GCCAGCAGTC AGTATTGGAT TGGCCTTGCC TGGCTGGTGG 000800
000801 CAGTTTGGGA GAAACAGCCA AAGAGGTTAG TTTATTTCAA CACCAAATTA GACCATGGCC CATTTCCAAC GGGTCTCTTT 000880
000881 AAAGGCCTCT ATGGAATACA TTGCCTGGTT TCCTTCTTTG CAGTTCACCA CAGCAAGGAA TGTCACCTCC ATCCCAAGCC 000960
000961 ACCATTTTCT CATGAAGGCA AATCCAAGAA GGGCTTGCAG TTCTTGCTGA AGGGGGTACC ATTTGTGGGC AGAGTGATCA 001040
001041 ATACCATCTA GTTGGGGGAG GAGGAGCTTA TTTCTTGGTG TACTTGAATC AGAAGGTCCC TGCAAGCCAG TATGCTTCAT 001120
001121 TTGCCAGTGG CCAGAAATTC TCCCTTGCCT CCTTGATTGA GGTGTCCCAG ATGTAGTATT CCCACAGGGG TCTGGCAGGC 001200
001201 CCCTCCTGTA ACCACTCCAG TCACATTTTC TGCTCTTGAG GCAGAGGTGA CATCAGGACG TTTACAGCCT CCACATGAAT 001280
001281 TGAGTGTTCA TTTACCTCAG TATTACCGTG TTCATTTTTG TCCTCGTGCT ACAGTTAGCT CCCTGCCGCC TCTTGCAGGT 001360
001361 CTTACTTCAG CTCTTGCCTG TGACCCACAC AGCTTCTGGG CTCTGCCTCT GCTCTAAGAA GTGCTGTGGG GGTAGAGAAC 001440
001441 CAGGAAGGAC ATGCTGTTGG GAATGTACAC CTGGGCAGAG GTGGCCCTGT TAAGATGTGA CTGTAGCCAC AGCCAGGGAT 001520
001521 GGGATCCCTG GGTCTCTGGA ATCTGAAACC TCAACAAATA CCAGTCTTGA CCCCTAGCAG CAGAGATAAG AATAAAGGGG 001600
001601 TTGGTTTGCT ATTAAGTCAG ATGGGGGCTC TCTCCTTGTC ATGCTGTCCC TGTGGGTAAC AGACAGGGAT TGACCATCTT 001680
001681 ACTGTTGTAC AGGTAGCTGG TGGTGTTGGA TTATCCCATT GAAGCTGGGA CAGCTGTTCC TTTCTCATAG TGATAACTTG 001760
001761 GGTCTGTTGT CCTCTAAGGA ACGTGAAACA TACACTTCTT AAGCTGAACC ACGTAAACTT GAAATTCTGC GCACTGGGAG 001840
001841 AAATGTGTCC TGTGTTTCAA AGGATAAAAC TGTTCTAAAG GCTTCCAGGG TCATGATGGG ATTTTTTAAA TAAATGC
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Predicted Small Protein

Name NONHSAT021253_smProtein_854:1009
Length 52
Molecular weight 5856.7661
Aromaticity 0.117647058824
Instability index 49.2333333333
Isoelectric point 10.3101196289
Runs 9
Runs residual 0.0222286934576
Runs probability 0.0266737325561
Amino acid sequence MAHFQRVSLKASMEYIAWFPSLQFTTARNVTSIPSHHFLMKANPRRACSSC
Secondary structure LLLLEEELHHHHHHHHHHLLLLLLLLLLLLLLLLLHHHHHLLLLHHHLLLL
PRMN -
PiMo -