ENST00000441500.1

From LncRNAWiki
Revision as of 09:59, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000441500.1

Source

Gencode19

Same with

lnc-POTEG-4:4,NONHSAT035474

Classification

intergenic

Length

2398 nt

Genomic location

chr14+:19650032..19692921

Exon number

8

Exons

19650032..19650126,19652244..19652354,19653625..19653772,19653893..19654004,19655734..19655871,19656089..19656224,19680595..19680685,19691355..19692921

Genome context

Sequence
000001 GAGGCCCCTG CAGCAGCAGC GGCGTGGTCA GAGCGAGCTT CGGAGAAGCA GTGGTGGGTT CCATGTGATG GTGGAGTAGG 000080
000081 AGGCAGGTCT CCGCGGTTCA TCTGTGTTGC TCTAAATGAC ACTGTTTCAT TATTTTGATG GCTGGAGAAT ATTTCCTAGT 000160
000161 GTATGTATAT GAGAGTTTCT TGATCTCTTT ATCTGTGGAT GAACAGCTAC TTTGAAACAT ATGGTACATT TGTGTTAAGG 000240
000241 CTAGTCACCC TGCTGTGGAA TAGAAGGCCA GAATTGATCA GTCTCATCTG AGAGTAACTT TGTACCCATC ACTGATTCCT 000320
000321 TCTGAGACTG CCTCCACTTC CCCAGCAGCC TCTGGTTTCT TCATGTGGCT GCAGATGGCA GGATTTCCCA AAGGTTTCTG 000400
000401 GCTGAAACAT ATTCCGTGGT GTATCTGTAC AGCAGTTTCC TCATCCCTGC AGCTGTGTTT GAACAGGTCA TTTACCATGC 000480
000481 TGTCCTCCAG GTTCAACAGT ATGGCTCCAA AGGATGAAAT TTCATTCTGA TTTTCTGGCT GAAGACTATT CTCTTTGTGT 000560
000561 ATGTCCACCA CAGTTACTTT ATCCCTTCAT CTGTGGATGG GCAGTCTCGC TGTATTGCCC AGGCTGGAGT GCAGTGGCAT 000640
000641 GATCTCAGCT CACTGCAAGC TCTGCTTCCT GGGTTCACGC CATTCTCCTG CCTCAGCCTC CTGAGTAGCT GGGATTACAG 000720
000721 GCACCCGCCA CCACGCCCAG GAAAGAAAAA AGAAGAAAAC AAACCTCCAT ACGAGAATGG GTCTAAAGGA ACTTCCCAAA 000800
000801 CCTCCATGAT TTTGCAGGAA ACAAGATAAA GGTGGTTTCC ACAAGAAAAA TGGCACAATG TTTCTCAGAA GACAATTACA 000880
000881 TAAGAATCAG CATACTTCAA ATTCACAGCA AATAATCAGA CAATTGATGA AAATACTTAC CCAAACACTA ATTGTAGACT 000960
000961 ATGCCTTCTG AATATGTTTG TCATAAACTT GGAGTAAGGA ATCCTCACAG GCACTGGACA ATTCAAAAAA CGTAAAGTTG 001040
001041 TTTGTTAGAA TACTGGTGCT TTTGGGTAGA AACCCTCATC CATATCCTGG TAAGGCTTGA AGTTGCACAG GAGTTTTCAT 001120
001121 TTGTCAAAAC CCAGAAAACC ATAAGCTTTA GATTTGTGAA TTTTATATTG TATTATATGT GACCTTTCTT TTTAAAAAAT 001200
001201 GAGCTGTAAG CAGTCTCCCA GACAGTAGCT CAGCCTCCAG AACTCTCTTT CTGCATAGTT GAAGACCCCT CTTCACACAA 001280
001281 GATGGTAGCA ACAAATCATA GGTGCAATTG CACCAAATTC ACAGAAGATC AATTGAAAAT CCTCATCAAT ACCTTCACTC 001360
001361 AAAAACCTTA CCCAGGTTAT GCTACCAAAC AAAAACTTGC TTTAGCAATC AATGCAGAAG AGTCCAGAAT CCAGATTTGG 001440
001441 TTTCAGAATC AAAGAGCTAG GCATGGATTC CAGAAAACAC CAGAACCTGA CTTTAGATTT AAGCCACAGC CATGGACAAG 001520
001521 ATTAACCTGG TGTGGAGTTT CAAAATAGAG AAGCCAGATG GTGTTGTACC ACCTATAGCA CCTTTCAATT ACACACAGTC 001600
001601 ATCCATGCAT TTATGAAAAA CCCATACCCT GGGATTGATT CCAGAGAACA ACTTGCTGAA GAAATTGGTG CTTCAGAGTC 001680
001681 AAGAGTCCAA ATTTGGTTCC AAAATCGAAG ATCTAGATTT CATCTCCAGA GAAAAAGAGA ACCTGTTATG TCCTTAGAAT 001760
001761 GAGAAGACCA GAGAAGACCA GGGGCAAGGT TTCTGAGGGA CTTCAAGGTA CAGAAGATAC ACAAAGTGGC ACCAGCCTCA 001840
001841 CTAGCACTCT CATTTCTCAA GAGCCAGAAC ATGGTGAATA CAATCAAGTT CAGTGTATTT GATAATATCA ATTTGGGCCC 001920
001921 CAAATCTCTC TCACAGTCTT CCTGGGAGTC TATTCTTCTT CCAAAAGTGC AAGCTAAGCC TTCTGAAGAT GGTAAAGAAC 002000
002001 TTGGCCGGGT GTGGTGGCTC ATGCCTGTAA TCCCAGCACT TTAGGAGGCT GAGGCTGGAA GATTGCTTGA GCCTAGGAGT 002080
002081 TTGAAACCAG TCTGAGCAAC ATAGTAAGAC CCTGTCTCTA TTCTAAAAAA CAAAATAAGT AAAAAGGACT GTAGGAGGCC 002160
002161 AAGACAGGTA CAGGAGGCAC CACACTACCC TGTTGACACA GCCTGGATCC AGAGTTCAGC AGACCTTGAG ACAATGAAAA 002240
002241 CAAACTTAGT AATAATCATT TTTCAATCAT TGCAGTAATT ATTGATTTGG ACAAAAATCA ATTGACGTCA AAACCTTAAA 002320
002321 GTGACGTTTC TCTGCCTATG GAGTGGTCAT TCTTTTATTC CTTTAGTTTC ATAATAAATT TTCTTTTACT TAAAAAAA
[back to top]

Predicted Small Protein

Name ENST00000441500.1_smProtein_362:529
Length 56
Molecular weight 6344.4768
Aromaticity 0.145454545455
Instability index 76.4327272727
Isoelectric point 9.09954833984
Runs 11
Runs residual 0.0484848484848
Runs probability 0.0347432994492
Amino acid sequence MWLQMAGFPKGFWLKHIPWCICTAVSSSLQLCLNRSFTMLSSRFNSMAPKDEISF
Secondary structure LLLLLLLLLLLHHHLLLLLLEEHHHLHHHHHHHHLLLEEEHHHHLLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLL
PiMo oooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiii