ENST00000515706.1
Revision as of 14:34, 13 October 2014 by 73.162.128.239 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
ENST00000515706.1 |
Source |
Gencode19 |
Same with |
lnc-AC008394.1-2:1,NONHSAT102561 |
Classification |
intergenic |
Length |
767 nt |
Genomic location |
chr5-:85676478..85677244 |
Exon number |
1 |
Exons |
85676478..85677244 |
Genome context |
|
Sequence |
000001 TATATATTAT TTAATATATA ATATATTAAA TATATTTAAT ATAATATTGT TTAAATTTAT GCATATGTAA CTATATGAAT 000080
000081 GCCATTTTCT ATCCTTAAAT TATAGAAATT AGTATATGAT GAGTAAATTT ATTTGCTTTG TATTCTGAAA TAATTTTGAT 000160 000161 GTTGAGTGGA AATATGAAAT TTTAATCGGT ATTTCCAAAG AAAACAAATA GAATTGTGTT GAGGAAAATT TCCCCCAAAG 000240 000241 TTTGTGCTCA ACATTTTGTA CATAGACACA AAATTATGAG TAAAAATTAT GGAGTTTTTG CTTAATATGT ACTGAATAGA 000320 000321 AAGAATTCAC TGTAAATGCA GGGCACTGGA ATGAATTTCC AAAATAGTTG TTCATTCCTT TATTCATTCT CTAATGCAGT 000400 000401 AAATATTTAC TGAGTGCTTA TTATATGAAA CTCTCAGATT CTAAGGAAAA AGAGACACTC AATAGAGAAG AAATTCTTCT 000480 000481 TTTTATAGGG TTTATGGTGA AAATCTGAAT GTCTTAAATG AAGATTAAGT CAAATATAAA GATACAGCTA ATCAGCCAGC 000560 000561 ATGGTGGTGC ACATCTGTAG TCCCAGTTAC TTGGGAGGGG CTGAGGTGGG ACAATCGCTT GAGCCCGGGA AGTTGAGGCT 000640 000641 GCAGTCAGCC CTGATCACAC CACTGCACTC CAGCCTGTGA CAAGAGTAAG CCCCTGTCTC CAAAAAATAA ATAATCAAAT 000720 000721 CAAATGAAGC CAAATCAAAT AAAGATGTAG CTAAGAGGAA GAGCTTT |
Predicted Small Protein
Name | ENST00000515706.1_smProtein_560:679 |
Length | 40 |
Molecular weight | 4089.7361 |
Aromaticity | 0.025641025641 |
Instability index | 77.3794871795 |
Isoelectric point | 6.69329833984 |
Runs | 6 |
Runs residual | 0.0148944193062 |
Runs probability | 0.0482541364894 |
Amino acid sequence | MVVHICSPSYLGGAEVGQSLEPGKLRLQSALITPLHSSL |
Secondary structure | LEEEEELLLLLLLLLLLLLLLLLLEEEHHHLLLLLLLLL |
PRMN | - |
PiMo | - |