NONHSAT023506

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT023506

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1207 nt

Genomic location

chr11+:86666661..86712001

Exon number

3

Exons

86666661..86666754,86669024..86669068,86710918..86712001

Genome context

Sequence
000001 TTGCTTTCCT CCCACCCGGA TCTAGGCGCG CAGGGGCCAA GCAGGGACGC AGCCCAGTGG CTCCAGCCAC GCCGTCCTGC 000080
000081 CCCCTTCTGC AGAAACTGAT GCTCTGAGAG GCCAAGCAGT TTGCCCAAGA TTACACAGTC ATAGCCGTGC CTGGGAGAAC 000160
000161 CTTCTCTTCA ACTCTGCCGC ACCACTGTCA AGCTCACCTT TCTTCTAAGG TTTTATTTTA GAGTTAACAT CCTCCAAAAA 000240
000241 GCCTTCCTCA GGAGTTGAAG GTGCCCCTAA TATCACAGCC ATGGCATCCT GTACACTGGA CCTTATTGTC TGTCTGCCTG 000320
000321 TTGTACCTTG TATGAGTCTA TAAGCAAAAC CTATAAGAAG CCACATCTGG CTATTCTATG TACTCAAAAA ATAATTGGCA 000400
000401 AGTGAAAGAA TGAGGAAAAG GAGAAAAAAT TCAGAAGGCC CCTACCCCTT CCAATGGGTC AAGTCAGGAA TTTCCTACCT 000480
000481 GCATGTGATT CCCTGTGTCC TAGAGGGTTT TATTTACTCC TCAGACCTTG GAAACTGTTA ACCAGAGTCT CTGTTTGGAG 000560
000561 ATCTTATCTG TGTGCTTCTC CATGGGTGTT GTTTCCCTGT CTCTGCAGCC ATGCATTCCT CAGCTCTTTA AGTGGTGGAG 000640
000641 CCTGTCTGCC TGGATAGAGT GCAAAAGCTA CAGTGTAATC TTGCTTTCTT TCAGGGCCAC TGACCAGAGG AAATAAAAAC 000720
000721 TGGACTGATT GGGCTCTCCT GATGTAGACC AGCCAGTGGC CCTCTAAGTT TCCTTCTATG TTTAAAATTC CTTATCTGAC 000800
000801 ATTGCTAGCT GATCAGCAGG CCCACAGGTC AGCTGAGGGC TTATCTCCAG GGCTGGAGCT TCAAAGAGAT ACATGCACAC 000880
000881 GACTCCCCTG GGTCAGATGG GCTGTGTCAC AGTGAGTTGG GGATAATTTG GGATCAGTCA ACATAACACA CATAACACAA 000960
000961 CCCATTAATT TTTTTTTTCA AAAAGCGAAG TTTATTTTAC TTTTTCCCAT TATGAAAGTC ATCAATGCTC ATTATAGAAA 001040
001041 ATTTGGCAAA TAACAAAAAG TGGAAAGAAA AAAATTCCTT AATAATTTAG TATATTTGAT ATATTCATCC TTAATCCTTA 001120
001121 ATCTTTTACT ATGTTATATC TTTAATAGTT GTGATGATAT ACTTTTTGTA ATAAATATAT ATTTGTGTTG TGGCTTTTTT 001200
001201 AAAATTT
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Predicted Small Protein

Name NONHSAT023506_smProtein_581:715
Length 45
Molecular weight 5117.0188
Aromaticity 0.136363636364
Instability index 44.5022727273
Isoelectric point 9.30145263672
Runs 9
Runs residual 0.0414438502674
Runs probability 0.0290388427644
Amino acid sequence MGVVSLSLQPCIPQLFKWWSLSAWIECKSYSVILLSFRATDQRK
Secondary structure LLEEEELLLLLHHHHHHHHHHLLEEEELLEEEEEEEEEEEELLL
PRMN LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLL
PiMo ooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiii