NONHSAT044059
Revision as of 13:24, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT044059 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3367 nt |
Genomic location |
chr15+:57592516..57599955 |
Exon number |
5 |
Exons |
57592516..57593122,57593541..57595211,57595725..57596125,57598797..57599268,57599740..57599955 |
Genome context |
|
Sequence |
000001 TCTCGCTCTG TCACCCAGGC TGGAGTGCAG TGGCGTGATC TCGGCTCATT GCAACCTCCG CCTCCTGGGT TCAAGCAATT 000080
000081 CTCCTGCCTC AGCCTCCTGA GTAGCTGGGA TTACAGGCGC CCGCCACCAC TCCCAGCTAA TTTTTGTATT TTTAGTAGGG 000160 000161 ACGAGGTTTC ACCATGTTGG TCAGGCTGGT CTCAAACTCC TGACCTCGTG ATCTGCCCTC CTTGGCCTTC CAAAGTGCTG 000240 000241 GGATTACAGG CGTGATGGAG ATGATACTCC CTAAATCACA AGGGTGTGGT GTGAAGATGA AATGGCTGCA CGTGACAGAG 000320 000321 GAGTTGGAGA ACAGGAAGCA AGTGGATTAC TTGGATGAAC TGTGATGGGC CCAAGAAGAA CTAAGCCAAT CACTCCAGGG 000400 000401 GGCGTTTTCC CAGGATCCAG GCAGAGAGCT GATTCCAGCA TCCACGTTGT ATCCCCCTCC CGCTGTGGCC GGGGTCTCCA 000480 000481 AGAGCCGGGC ACCCACTGCA GAGCTTCCAA GCCCAGGCCC ATTTGAACAC AGGAGGACTT TTGAGGTTCA TTTAACCCCA 000560 000561 AAATCAGTGA TTCTACATCT CAAGCTCATA TTTTGAAGTG TTTACGGGGT TGCAGTGAGC CAAGATTGCG CCATTGCACT 000640 000641 CCAGCCTGGG TGAGAGAGCG AGACTCCATC TCTGAATAAA TAAAGTAACA AAATACATTT CAGTCTCGAG CTCCAGTTCC 000720 000721 CTGCCAGGAA GAGCTGAAGC TGAGCTCTGG CACCCCCTGC TTCTTCTCCC TCATCCCTAA AACATGTGGG GTACTGGGTG 000800 000801 CCAAAGGAGA TCTGAAGATG GCCACCACTC AGACCAGCAG TAGAGGCCAA GAAGGTGGTG AGAAATTTTA AGGTATTGTA 000880 000881 GCATATGCTC TCCAGGGTGA GGACACAGGA TGCTGGGACC TAAGGAGGGA GAAGTTAACC CAGAGAGGGC CCAAGTCAGG 000960 000961 GAGGACCTGA CTGTGGTGAC AGAGCCAGTC ATGCTAATAA TAGGAGCAGT GGTTTTGCAA TCACAAATAT TGGTCTGGGG 001040 001041 GACTGCGGGC CCAATGTGGT GGGAGTTTTA GAGCAGGGAC CCCTCCACTG TACGTGGATT CTTATACTTG CTAAGTTGCA 001120 001121 CTGAATTCTC AATCAACCCA TTTGGAGGCT CTCACCAAGA CAGGAGTCCC TTTGAATTGG TAGGATGTTA AAAGCTTCCT 001200 001201 CCAGCCATTG ACCCTGGGTC CCATTGGTAG AAATCAGATA ATAAATCAGA TTTTCCAGGT AATCCTCAGT TTAATGTCCA 001280 001281 TTCCCTCATT CAATCAATTA TTCAATTACA AATCATTTTT AATATGATTT TATGGTTCAG GAATTCAGGC AGGGCTCAGA 001360 001361 TGGGCAGTTC TTCTGCCCCA CATGGCATTG GCTGATAACA GGCTACCCCA AGGAAATCAC AGTGTAATGG GAGATGGGAA 001440 001441 ATAGGTTAAC ACAAAGTTAC TATACTACAA GAAAAATCTT CAAATCTTCA ATCTTCATTC TTCATGGGTG TGAGTCTTCT 001520 001521 CTGGTGGAGA AGAGAGTTCT TTGCTAAATT ATATTCCTGT GTTAGCCAGC CAAGCACACA CGGAGTACAG CTGTCCCTTG 001600 001601 CTATTCATGG CAGATTGATC CCAGACACTG CCACCCCCAG CCCTGTGAAC ACCAAAACCC ATGGATGCTC AAGTCCTTGA 001680 001681 TATAAAATGG TATGGTATTT GCACATAACC TACACACATC TTCCCATATA CTTTAAATCA TCACTAGATT ACTTATAATA 001760 001761 CCTAATGCAA TGTAAATGCT ATGTAAGTAG TTGCTACGCT GTATTGCTTA GGGAATAATG ACAAGAAAAA AAGGCTGTAC 001840 001841 AACTTCAGTA CAAATGCTAT CATTCATTTT TTTATCTGAA TATTATGATC CATGAATACA GAGGGCTGGC TGTAAAAAGA 001920 001921 ATGTACAGTT TGGTACTTTA CTCCTAGTTT AAGTCATCTC TTTCGGCCCA TACAGGTTGC CTGGGGCAGG GCGGTGGTGA 002000 002001 GTGTGTTGAG TCGGCCCTAT ACCCTGTTCC ACAATGCCTG GTGTCCTTGG CACGTAGCTT GCAGGGCTGC TTCCATGGAT 002080 002081 GGCTGCCTCA TCCCCCACCC CTCCTTCATG GCACCCTCTT TTCTCCAACT CCTTTTCCTC TGCTGAGTCC TACCTTTTCT 002160 002161 TGCCAGACCA GGGATTTGCC AATTATTCTG GATGGGCACA GGGAAGGGGC CCTCAGATCC TGCAGAGGGA GCATCTGAAA 002240 002241 GACAATGAGA CCCTGTACAC AACCAAGCTG AGCCTCCTCC TCTCTACCCC TGCCTGTGGC TCTCCCGTCT CCTGGCATTC 002320 002321 TAACCTGCCA CTGAATTCTT CCCACGCCAA ACGCAGGTTA GGAACCTAAG CTCGGATGAA ATGCTGGCTT AGACCTCATT 002400 002401 GCTACTGAGA AGCAGAAACC ACACTTTTTA GTTGGTAGAG GTGGATGTGG ATTGGGGCCA TAAAGTTTCC TCAATCATTG 002480 002481 AATAAGGATT TCATTATTTG GACTAACTAA ATACATTAGA TTATTTATAC TAACTAAATA AATTAGATTT ATTTTTCGAA 002560 002561 GTTTAAAATC ATTTTCAATA GTGACGAAAA AGGCTGTAGA TGAGATGGGA GAATCTTTCG ACGCCAAATT CTTCCCATCT 002640 002641 CCTGCCTAGT ATGTATCACT ACACCTTGCC CAGAGAGACG GAGGACGCGC ACAGCCCGAG GAGGCAGAGC CCCAGACGGG 002720 002721 AATGGGCTTT TCAGAGGTGG GGTGCGGGCG AGGGGACGAT GCATTATTTT TAATATTTGA TTTATTTTTC CAACTGGACT 002800 002801 TCTTCCCGGG GCTCTTTCTG GGCCCAGCTG CCTTTGTGAT CCCGCGCCCC GGTCCTCGGC CTCTCACCTC CAGCGCCGGG 002880 002881 GCGCCCCCTG CTGTCGGAAG CGGCTGTGAC CGGGCAGAGG TGCTATCTGG GACTCTGGGT TCTCAGCCCG GGGACAGCGA 002960 002961 ACCGAGGGGC AGATGATCCA TCAGAAAAGA GCCGGCACTG CCCAGCCCCG CGCCCCTGCC CCTGCCTTTT TCCGGGAGCG 003040 003041 CGCCGCGCCG CACCCGCTAC GGCCGCTTGA CCCCATCTTT GAGCCCGGCC CCAAGCTCTG GGACCGTCGT GCCCCTCATC 003120 003121 AAGGAAGAGC CAAGGACCCC AAGGAGAAGG TAGAAAGGAG TTCATGAAGG CAGAAATGCC TGGGGCCCAC GAACATCCCA 003200 003201 GTGTGGCCCT GGACGGGACA TCATGCTGGG CAACACAGCT AAAATGCGGG TGAAGACCAG ATTTCTTGCA CATGGCGGTG 003280 003281 ACGGGATGCT CCCTAGAGAG CTTCAAGTGG ATTCTTTGCT TTTTATTTTC TCTCTTAATA AAAATGTATG ATGTTTACAT 003360 003361 TGTCAGA |
Predicted Small Protein
Name | NONHSAT044059_smProtein_2078:2368 |
Length | 97 |
Molecular weight | 10544.6497 |
Aromaticity | 0.104166666667 |
Instability index | 60.10625 |
Isoelectric point | 8.97943115234 |
Runs | 14 |
Runs residual | 0.0115979381443 |
Runs probability | 0.031828046534 |
Amino acid sequence | MAASSPTPPSWHPLFSNSFSSAESYLFLPDQGFANYSGWAQGRGPQILQREHLKDNETLY TTKLSLLLSTPACGSPVSWHSNLPLNSSHAKRRLGT |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLHHHHEELLLLLEELLLLLLLLLLLLEEHHHHLLLLLEEE EHHHHHHLLLLLLLLLLLLLLLLLLLLHHHLLLLLL |
PRMN | - |
PiMo | - |