NONHSAT100042

From LncRNAWiki
Revision as of 07:15, 13 October 2014 by 73.162.128.239 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT100042

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

829 nt

Genomic location

chr5-:1585102..1634005

Exon number

7

Exons

1585102..1585248,1589362..1589480,1593228..1593399,1599742..1599942,1602806..1602850,1632960..1633021,1633923..1634005

Genome context

Sequence
000001 ACCGCCCCAG CCCCGGGCGG CCCTGGGCCT GCTGCGGGCG CGGCGCTGCC CGACCAGAGC TTCCTGTGGA ACGTCTTCCA 000080
000081 GAGGGTCGAT AAAGACAGGA GTGGAGTGAT ATCAGACACC GAGCTTCAGC AAGCTCTCTC CAACGGCACG TGGACTCCCT 000160
000161 TTAATCCAGT GACTGTCAGG TCGATCATAT ACTACACTGA AGGCTGGTTA CGCTCTTATG TGCAATAGAA CCTCAAACAC 000240
000241 ATCGTAACAC ACCTTTGGAG AATCCTTACA AGAACACCAA GTTAACAGTT ATCTCTGACC ACACTACCTC AGCAAAAAAC 000320
000321 CAGGAAGAAA AAATATTCTT CAACCCTTTT CAGGGACAGA AAGCATCATT TCAAAAGTCC AAGAAGGGAA GGTCCTGAGG 000400
000401 CACGTGAATG GCCAGGATCA GATTGTGCCC GGCCTGTACG CCTGTGGGGA GGCCGCCTGT GCCTCGGTAC ATGGTGCCAA 000480
000481 TCGGCTCGGG GCAAACTCGC TCTTGGACTT GGTTGTCTTT GGTCAGGCAT GTGCCCTGAG CATCGAAGAG TCATGCAGGC 000560
000561 CTGGAGATAA AGTCCCTCCA ATTAAACCAA ACGCTGGGGA AGAATCTGTC ATGAATCTTG ACAAATTGAG ATTTGCTGAT 000640
000641 GGAAGCATAA GAACATGAGA ACTGCGACTC AGCATGCAGA AGtgccgctg ggttagggtc tccacaaccg agctggtctc 000720
000721 agcaagtggc gcccacacat gggggctcga atccaggtcg aagggtcacc ggagcgacag aaaacttgga actaagctgg 000800
000801 aggacaccga gtactcttat gcagtcccc
[back to top]

Predicted Small Protein

Name NONHSAT100042_smProtein_407:538
Length 44
Molecular weight 4843.7715
Aromaticity 0.0697674418605
Instability index 86.0627906977
Isoelectric point 11.7064819336
Runs 8
Runs residual 0.0287431408414
Runs probability 0.0296877760114
Amino acid sequence MARIRLCPACTPVGRPPVPRYMVPIGSGQTRSWTWLSLVRHVP
Secondary structure LLEEEELLLLLLLLLLLLLLEEEELLLLLLLLLLHHHHHEELL
PRMN -
PiMo -