NONHSAT108626
Revision as of 11:09, 13 October 2014 by 73.162.128.239 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT108626 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2083 nt |
Genomic location |
chr6-:30259327..30264447 |
Exon number |
3 |
Exons |
30259327..30260376,30262248..30262741,30263909..30264447 |
Genome context |
|
Sequence |
000001 AGAACATATC TATGAGTGAT TTCTGATAGG GAAACATGTT GACCTTGTCC CAAATACCTA GTGCTTTCAA AAAATAGTAA 000080
000081 CATGTCTAAC AGTCTATACA AATTCTTCTC TCTTGTCAGG TAGAAGTGAG AGCAAGAGTC GTAACAGCAA ACACCCTTCT 000160 000161 GACCTCTGAA ATGCTTCAAA CTTTAGATTA CAAAGATTTT GTTGTCACGG ACCGGGACAC AGCTGGGGGT GTTGGAAACC 000240 000241 ACACCCACTT CTGCCTGAGG GAAAGACAGG ATAGTAGCTA GGTGACCACT AGATACCCTC TCTCAGAGTT GAAGGGTCCT 000320 000321 TAAGCCTGAG AGGTCATTAT TGTCATCATC TGTGCCCTGT aatgaggtgt tagtaggggt gatatgtatt tcttctggac 000400 000401 tgggaattta actgctggtt tatgttcttc cagagctccc tctttgccca ctagcagggc attagctggt gctgaagaca 000480 000481 gtggctgctt ggcgagcctg gatctccaag tgaccccctc agcaactcct gatgaacagG ACTGAAGCCA ATATTAAAGC 000560 000561 AAGTCAACCA AAGGTTCTCT GGTGTAGACA AGACAGCAAA AGGACAGACT ACCTTGTGGA ACCTAGCATT GTTCTCCTTC 000640 000641 TGCAGCACTA AGTAACATTT GTTCTCCGTT AAGATCTTTG CAAACCACAC ACAAGAATTG CTGGTCATCC TGCCAATAGA 000720 000721 TGCTGCTCAC AGAACCAAAT TTCCTGTGCT GAATTGTCAC TCATGGGCTT GAGAGTAGGA GACTGGAGAC CAAGGTGGCT 000800 000801 AGAATCCAGT TGGGCCTGAT GTCTCCCTGT TGAAAGGGCT CCTTGTGGAA TGAATAGCAC ATGGCTCCTG TGGTGGATCT 000880 000881 GATAGTGGCA TAGCACCAAG TGATGCAGGC CTGCCAGGGG CCACAGACAC AGAAGATGCT CCCGGGGTCC CCCATGTACT 000960 000961 CCAGACACAC TGCAGGCCAC CTCTCCCAGC AGGTTGCCAG TCATGGGCCC CATCATCATG ACTTCTGTCC AAGGTACTGT 001040 001041 GTGCAGAAAT GTGATTGAGA TTCAAGTCAG GGCCTCTCTG CCCTTTTCCC TCCAGAAACA AAACCAAGAT AATTTATCCT 001120 001121 GAACACGGTG AAAAAAGGAA GGGAGGGAGG AGAAAAAGTC CGGGTCTCAC CTGGGATTCT CTGTCTCCTG CAACATGAAG 001200 001201 GATTTAGCCT GGGAGGAGGT GGTGAGAACT CTGGGAGAGA AAAAAGAAGG AAAGAATAGT TTTACCCATG CTGAAGTTAA 001280 001281 TTTAAACCTT CACCTAGAGA AGCAAAAAAA AAAAACCCAC ACTTTCCCAT TTTGTGCCTC CCTTCCTAGA GTTTTAGCCA 001360 001361 AAGGTTTAGC TAAGTAATTG GTTTTACCAG CGCACTCACT CCTCCTATCC CAAGTCTGTT TGACTCCCTC CCCATCATCC 001440 001441 TCCTCACCTC TTTTCAGGCA GGGTGGGGAT AGCAGCAGGA GGAGATTTTG GGAGCCTGGC AACTCCTGCA AGGACCGCAG 001520 001521 GACAGCCCCT CTGTGGGGAT GCGTGGTGCC CCATCTGCCG CCCTTCTGAA GAATGCACTG CCTTCACTTT TTACTGTGTT 001600 001601 AGAGTCCATC CAGACTGTTC TATCCAAAAA AGTTTCTTTT TCCCCCACAG GCAATCAGGA AATGATTCCT TTCCCGACTG 001680 001681 CTTCTGTCTA GTGCCTGGGA ATCTTGAGTC AATCCCTCAG TAAGTCAGTG ACTAGGGAAA TCCCTCTCTG AGCCTCCCAG 001760 001761 TTCATGTTGC TTAGGGAACC TGATATTTTC GTGAAACCTG CCTACACATG GGCAGCCCAA CAGCAGAACA AATGGTGGTG 001840 001841 ACCAAAGTGA ACAAAGAAGT ATAGTTGTGC CAGCTTCGTA GTTGCCCATG TGGACAAGTC AGCAGGATCA GGACACGAGG 001920 001921 AAGAGTAAAT GTGAGACAGT CAATGTGACT TCTGCGATAA ACAGATTTTT AAACCCCGAA ATTTTGCAAA ATTTTGGTGA 002000 002001 AACCTGAACT TTCTTCGTTG CATATACTGG CACTATCTGT ACCATCATAC AACTGTCTCA CATTAAAGCT ATTTTTCTTG 002080 002081 GGC |
Predicted Small Protein
Name | NONHSAT108626_smProtein_383:544 |
Length | 54 |
Molecular weight | 5521.0439 |
Aromaticity | 0.0754716981132 |
Instability index | 51.9490566038 |
Isoelectric point | 4.10113525391 |
Runs | 7 |
Runs residual | 0.0281868384722 |
Runs probability | 0.0348247407071 |
Amino acid sequence | MYFFWTGNLTAGLCSSRAPSLPTSRALAGAEDSGCLASLDLQVTPSATPDEQD |
Secondary structure | LEEEEELLLLLLLLLLLLLLLLLHHHHLLLLLLLLEEELLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |