ENST00000412204.2
Revision as of 14:10, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000412204.2 |
Source |
Gencode19 |
Same with |
NONHSAT005668 |
Classification |
intergenic |
Length |
5783 nt |
Genomic location |
chr1-:143118705..143211070 |
Exon number |
9 |
Exons |
143118705..143119179,143121073..143121165,143133144..143135855,143189434..143189487,143194181..143194342,143195680..143195893,143196522..143196803,143207727..143207876,143209430..143211070 |
Genome context |
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Sequence |
000001 TTGATACTTT TACACCACAG AAGTAACTGT GATCTGTCAG AGAACTAGAA GTAGAGTCAG AAGTCCTGGG GAAAATCCTG 000080
000081 TAGCTTGCTT ATATTTTTAA CATTTCTTTT TCAAAATTGT GGTAACTAGA TGAGTTCATC AATGAATGTA TACAGGAGTG 000160 000161 ACTAGTATAA TGTCTAGATT TATGATTTAG TAAATGTAAT TCTTACAACT GACTATAAAA GTGTTAAAAG AGTCAAATTG 000240 000241 AAATAGAATG TTATCAGTGA AACAGAACTG TAGTAACTCT GGGAAATTTT ATCTGTCCAA ATACGTGTGA AGTAAGGTTC 000320 000321 TTACTATAGG GTAGTGTATG GGTTAGATAT CAAAGTGTAA ATGCAATTTT TTGATATATT TTAATTTAGT CAAATTTGTT 000400 000401 AATGCTTTAA TTTATGCTTT TGAGTTTGTT GTAATTCAGG GAAAGGCTTT TCCAATTCTG AAATTCTTAA AAATTCTCTG 000480 000481 GTGTGCGTGT GTGTGTGTGT TTACTTTTAT AAATTCATTG ACTTTAAATA AATTTCTGAA CTTTTTTGAA CTTATGCTCT 000560 000561 ATAAGGTTCA AAGTTTTGCT TCAACTTTTT CTCCAGTTGG ATATCCACTT ACAGTAACCT TTTTAGTATA TGGACGTGCA 000640 000641 GGTTATTCTT TAACTTCAGA GGTAATCATG ATATGTTATT TTATTGAGTA CTAGCTAAAA CTTTCTTTTG TTTTATTTAG 000720 000721 GATTTTCGTA ATCACGAAGA AATGAAAGAT CTGATGGATG AAAATTGAAT TTTGAAGACA GATATTGCTA TACTCAGACA 000800 000801 GGAAATATGC ACAATGAAAA ATGACAACCT GGAAAAAGAA AATAAATATC TTAAGGACGT TAAAATTGTT AAAAAAACAA 000880 000881 ATGCTGCCCT TGAAAAGTAT ATAAAACTCA ATGAGGAATT GATAACAAAA ACAGCATTCC GGTATCAACA AGAGCTTAGT 000960 000961 GATCTCAAAG CTGAGAATAC AAGGCTCAAT TCCGAACTGT TGAAGGAAGA AGAAAGCAAC AAAAGACTGG AAGCTGAAAT 001040 001041 TGAATCATCA GTCTAGACTG ACTGCTGCTA TAAGTAAACA CAGTGAAAGT GTGAAAACAG AAAGAAACCT AAAACTTGCA 001120 001121 TTAGAGTGAA CACAAGATGT TTCCGTACAA GTAAAAATCA GTTCTGATAT TTCCGAAGTA GAAGATACGA ATGAGTTTCT 001200 001201 TACTGAACAA CTTTCTAAAA CGCAAATTAA ATTCAATACC TTAAAAGATA AGTTCCGTAA GAAAAGAGAT ACTCTCAGAA 001280 001281 AAAAGTCATT GGCTTTAGAA ACTCTCCAAA CGACCTAAGC CAAACACAGC AGCAAATAAA GGAAATGAAA GAGATGTATG 001360 001361 AAAATGCAGA AGCTAAAGTG AATAATTCCA CTGGAAAGTG GAGCTGTGTA GAAGAGAGGA TATGTCAACT CCAACATGAA 001440 001441 AATCCGTGCA TTGAACAGCA ACTAGATGAT GTTCATCAGA AAGAGGATCA TAAAGAGATA GTAACTAATA TCCAAAGAGG 001520 001521 CTTTATTGAG AGTGGAAAGA AAGACCTCAT GCTAGAAGAG AAAAATAAGA AGCTAATGAA TGAATGTGAT CATTTAAAAG 001600 001601 AAAGTCTCTT TCAATATGAG AGAGAGAAAG CAGAAAGAGT AGTGGTTGTG AGACAACTTC AACAAGAAGC GGCTGACAGC 001680 001681 CTAAAAAAAT TAACTATGTT AGAGTCTCCA CTGGAAGGCA TATCACATTA TCACATTAAT TTGGATGAGA CACAGGTCCC 001760 001761 AAAGAAGAAA TTATTTCAAG TGGAAAGTCA ATTTGATGAT TTTATGGCGG AGAAGGAAGC TGTATCTTCA AAATGTGTCA 001840 001841 ATTTGGCTAA AGAGATTCAA GTTTTTCAAC AGGAGTTATT ATCTATGAAA AAAGTACAAC AGGAATGTGA AAAACTTGAG 001920 001921 GAGGATAAAA AGATGTTGGA AGAAGAAATA TTAAATCTTA AGACACATAT GGAAAACAGT ATGGTAGAAC TTAGTAAACT 002000 002001 ACAAGAATAT AAATCAGAGC TAGATGAAAG GGCAATGCAG GCAGTAGAAA AATTAGAAGA AATCCATTTA CAGGAACAAG 002080 002081 CAGAACATAA AAAACAATTA GAGCAGTTAA ACAAGGATAT AATACAGCTT CACTAAATAA GAAGGAACTC ACACTTAAAG 002160 002161 ATGTGGAATG TAAATTCTAC AAAATGAAAA CTGCTTATGA AGAGGTTACA ACTGAGTTAG AAGAATATAA GGAAGCCTTT 002240 002241 GCAGCAGCAT TGAAAGCTAA TAGTTCCATG TCAAAAAAAT TAACTAAATC GAATAAGAAA ATAGCAATGA TCAGTATCAG 002320 002321 CTCTTTATGG AGAAAGAGCA GGTGAAATAT TTTCTCAGCA CTCTTCCTAC AAGGCGAGGT CGAGAGTCAC CTTGTGTTGA 002400 002401 AAATCTTACT AGTATAGGAC TCAACAGAAA ATATATTCCC CAAATGCCCC TGTTGCTGTA TTGGACACTT GCTCCCATCT 002480 002481 ACTTTCTTCT CTGGAATCCA CGGGATGTCA CCACAGTGTT GGCCAGATAC ACAGGTCACA GGGGACTGAA CCTCATCACC 002560 002561 CCACAAACAT ACCATTCAGG TTTTGCCAAG AATGACACTG TAAATGTAAC AAAGCTTCTG TGCTTGTTAG TGAACACCAA 002640 002641 CTCAGCTCCT CTCCTGTATT CAGAAATCAG GATGAGATGA AAACAACAAG CAGGCCAGGC ACGGTGGCTC ATGCCTGTAA 002720 002721 TCCCAGCACT TTGGGAGGCC GAGGCGGGTG GATCACTTCA GGTTGGGAGC TCGAGACCAC CCTGATCAAA ACAGAGAAAC 002800 002801 CCCATCTCTA CTGAAAATAC AAAATTAGCC AGGCGTGGTG GCAAATGCCT GTAATACCAG CTACTCAGGA ACTGAGGCAG 002880 002881 GAGAATTGCT TGAACCCGGG AGGTGGAGGC TGCAGTGAGC CGGGATCACA CCACTGCGCT CTAGCCTGGG CAACAAGAAC 002960 002961 GAAACTCTGT CTCAAAAGAA AAAAAATTAA AAATAAAAGA ACAAGGAAAC AAAAGTAACA AGGCTTGACA CCAGATGAGC 003040 003041 CTGAATCTAA GCAAGAAAAG CCCAGAAGAA ATCCCATTTT GGGTCACTGG CTGCATGGTA GTAATACCAT ACACATAAGG 003120 003121 GAAGAGAGGA GGATGTGGCT TTCACTTTGA ATTTTTTGAG CTTAAGGTAA CTTTTGCGTA GCTACAAAGA AGCATTCAAC 003200 003201 AGAGAGTTAA ACCTATGATG GAAAGACTGA AGGGGTCCAA GCTGTAGAGA AACAGGACTG CAAACCACAA AGGGCAGAAT 003280 003281 CAGTCAAGGA GAGCTGCAGG GCGGGATGAA CAGGGACCAA TGGAACATTT GGACAAGCTG TTGAGAAGAA AGGAAAATTC 003360 003361 AGAGAAAAAG AACTGTCAGT GAGGTCATAA TAGGAACTGT TACAGTGAAC TAAATATGGC CTGGGAAGGA CTCTGTACTT 003440 003441 CTAGATTTGA GTCCCTGTGG ACAAACTGCA ACCTAACTTA ATAGGTAGAA AGACTGATAA CCTAACTTTG GAGTATGCAC 003520 003521 CTGTAACTAT AGCTGAGTCC TGGCCAATCC CAACAGCCAA ACTTCTGCCA CTCACACACT GCTGAGTGTT CAGCTGTGTT 003600 003601 CAAATAAGGC AAATGCTGAG CACTGTAACC AGTCCAGTTG TTTCTGGACC TCACTGCTGA GAACGGTAAG GGACCCAGTT 003680 003681 GCTTCTGGAC CTCACTCCTC ACTTCAGATT TCTGTACATC ACGTTCCCTT TATTCTCTAT AAATCTTCCA CCATGTAGCT 003760 003761 GTGCTGGAGT CTCACCAAAT CTGCTGTGAT TCTGGGGGCT GCCTGATTCG TGAATCATTC ATTGCTCAAT TAAGTTTCTT 003840 003841 TAAATTTAAT TCAGCTGAAG ATTTTCTTTT AATAGATGGT GTCAGAAGTG GGATCTGTGG GAGCAGGACT GCTAGGGCCT 003920 003921 CCGGAGCTAT AGTGTGGTGA GCAGTGTTGC TAGGGCTTCT AATGACCCCC AGGAGTGCTG AGGTACAAGA AAGGCACCTG 004000 004001 CAAGGACCGC TCTATGATGG CAACAGTGGC CCATGTGGAG CAGTTGCTAC GGAGACACTG GCTGCAGTGG GGAGGAGTGG 004080 004081 CTGGGGCTGT GCACTCCTCA AAGTTAGTGG GAGCCAGGAA CGGGTGGGAG ACCCAGCCCT TCTAAATTGG CAAGCAGGAG 004160 004161 CCCCACCCTC CCAGGCACAG CTGCAGCCAT CCACCCATGA CAGCAAACCC AGGCATCTTT GCACTCTCAG AGGCCCAGCA 004240 004241 AGCCCCCCTG CCCCTGCAGG TCCAGTCATA CCTGCTCCTA CCACCTGGCA TCTCTCCGCT CCGAGAGCCC ACTCCAACTT 004320 004321 CGGATCCAAG TTGAGGTTGA ACCCAGGCAC AGTTGCAACC CAGCCCAGTT TGTGCAAGCT CAGGGCAGTG CTGACATGCC 004400 004401 AGCCCCCTGC CACCTCGGCC CTCTCCACAC TTTGGGAACT GATGAGCACA GGAGGGACAT TGAAGTGAGG CTAAGAGTGG 004480 004481 CTCAGCACTG GCCTGAAGGC ACTCCTCTGC TCGAAAAGCC TGGGCACTGT GGGCATAGCT AACCACCATG CATCTCTCTC 004560 004561 AGCTGCTGAG AGCTGAACAG ACGTTGGGAT GACCTGCCTG CAGAAAGGAG CTACCCACTG CACGTCTCCT CTGAGCTGTA 004640 004641 CTGTTGCTCA ATAAAGCACC TCTTCACCTT GCTCACCTTC TACTTGCCCA CATACCTCAT TCTTCCTGGA CTCAGGACAA 004720 004721 GAACTTGGGA CCTGCCAACT AGCAGGGCTG AAAGAGATGT AACATAAACA GGGCTGAAAC GCACCCCTTG CTTGCCAAAT 004800 004801 TGCAGGCAAG AAGAAGAGAA GAGAGAAGGA GACAAGAGCT TTGGCCCTTC AGGGAGCCCA GACCTAGGAG CTCCCCAAGC 004880 004881 CAGGGCTGTG ACACCTTATT TGGGGCTCTG CAGTTCCTGC ATCTCCAAGC TTCCAGGCAC CACTGCATTC CCTGATACCC 004960 004961 ACAGTGGAAG CTGTTTGCAG TCAGTCTGGT CCAGCTGCAG CCTCACAGGG AGCTGGCACC TGTGCCGGTA CCTGGAGCTG 005040 005041 CCCACCCCAC TGCAGCTGGC ATGCTTGGCT GTGTGCAGTG GCCAGATCCC ATGCTCACAT GCTCACACCC CCTTCACTGC 005120 005121 TCTGTACCCA GCTCACCCTT GGCAGGTGTG GGATCCAGAC CACTAGCATG AGCCGAGTGG ACAGAACGAA CACAGTGGGC 005200 005201 CCGAGCAAAA CACAGGATGT TCCAGCATAA GAAGATACCT TCTACTCAAG TCCTTGTTCC ACCTTTTCAA ATCTCACTGG 005280 005281 TCTATTTCCC AGTGGGTTTC TAAACCAAAC ACCCATAAAC TCAGAAAATA CAGTGTAAAA CAAAGTGAAG AACAAATAAA 005360 005361 CAACTCACCA GAGATTTATT CGTTTCTTGT TGCTCTTGGA AACACCCAGA GGACACTGGA AACATAGCTG GGATAGAAGG 005440 005441 CAAATGACGT GGATTAAGGA GAGAACTGGT GTGGTTTGGT CCCAGATTCT TCTGCCCAAC ACTCTAGACA CATTACCTGG 005520 005521 GAAAGCCCTC CTCCCTCCTG AAAAAGAAAA ACTTCCCCAG GGGAGAAGAA TCCTTCACGC CTCATTAGGG GCAGCAAAGA 005600 005601 CTCAAGTTAA GATAAGATAC ATCTACAAGT ACATTAATTG GTAGACATTA GATGCACAAT TTATTTTTGA ATAAAAATAT 005680 005681 ATATTACCTA CTAATTTAGT AACAATATTA TCTAAAGATA TAATCTAATA ATTTAATACA AAGAAACATT ATAAGTTCAC 005760 005761 TAAAATAAAT GTTATAGAAA TAT |
Predicted Small Protein
Name | ENST00000412204.2_smProtein_2183:2344 |
Length | 54 |
Molecular weight | 6029.9582 |
Aromaticity | 0.0754716981132 |
Instability index | 46.0452830189 |
Isoelectric point | 9.75531005859 |
Runs | 7 |
Runs residual | 0.0281868384722 |
Runs probability | 0.0297776768365 |
Amino acid sequence | MKTAYEEVTTELEEYKEAFAAALKANSSMSKKLTKSNKKIAMISISSLWRKSR |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHEEEEHHHHHHHLL |
PRMN | - |
PiMo | - |