ENST00000564686.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000564686.1

Source

Gencode19

Same with

lnc-RBFA-1:6,NONHSAT060079

Classification

intergenic

Length

561 nt

Genomic location

chr18+:77826911..77853362

Exon number

4

Exons

77826911..77827045,77829798..77829906,77837589..77837710,77853168..77853362

Genome context

Sequence
000001 CACGAGGTGG CTCAAAGGGA ACTAAGCTTT GCGTGTGAAT TTAGGGTGAG GCTAAGAGCC CTCCAGGCAG GCAGAGGAGG 000080
000081 GTGCTGGAGG GAGGAGAGGC CGGTATAGGA CCTTCGCCTT GAAGAAAGCA CCCAGGTGGA TGAAGACCTG ATCATTGAAG 000160
000161 TTCACCAGTT ATTTTTCTCA AGAATGTGAA TAACAATGGG ATTTGCACTC ATTATATTTT TAGAATGGCT TCGCATAATT 000240
000241 TTCATGCATC CTGTGGACGA TGAACACAAA TGCAGCTGTG GCCGTGCCTG GCCTGTGTGT GTTGAACGCG TTCCTGCCGT 000320
000321 GCGGGAGCCA CCTACCCAGC GGAGCCTCAG AGTCTGAGTT CTCAATCAAT AGCGTTTATG GCAGCATTTA GCGGACACAG 000400
000401 AAGCACATCT GAAAGTGGAG AGAGACGCGT TTCCCCATTG CTGGCCGAGT CCCACCACTT TGCTCAGCTA TGAACACCTG 000480
000481 ACATCTCGTT TCATTTTCAT GCAAAATCTG GAGATAATTA TTATCCACAA TTCTAAGGCC TTAGGCCCCT CCGCATGAGC 000560
000561 C
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Predicted Small Protein

Name ENST00000564686.1_smProtein_377:472
Length 32
Molecular weight 3396.706
Aromaticity 0.0645161290323
Instability index 73.3451612903
Isoelectric point 6.81573486328
Runs 7
Runs residual 0.0245295698925
Runs probability 0.0214121684711
Amino acid sequence MAAFSGHRSTSESGERRVSPLLAESHHFAQL
Secondary structure LLLLLLLLLLLLLLLEEELHHHHHLHHHLLL
PRMN -
PiMo -