NONHSAT003940
Revision as of 11:26, 16 October 2014 by 192.168.72.52 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT003940 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3870 nt |
Genomic location |
chr1+:73771853..73804560 |
Exon number |
4 |
Exons |
73771853..73771957,73772851..73773046,73776536..73776673,73801129..73804560 |
Genome context |
|
Sequence |
000001 TGGTCACCTG CACTAACAGC CTGAGAGAAA AGGACACTGC ATATCACAGA GAGATGCATA GATGTTACAC TCAGAAAGAG 000080
000081 AGTGAACAAC TAGAAGATGT GGAAGAACCA GTTTGGCTCT GGAGTCAAGA ATTCTCAAAA CAGCTTTCTG AACCTGAATC 000160 000161 GCACGCAGTA AAGCTGGTGT TCTCCTGAAG CCAACATTTA TGGTATCACC TTGCTGATCC AGGCAAAATG GCAAAAGTGT 000240 000241 AGTGAACATA AAGCCAGGGG CTGAGATTGT GGATGTCCTC TGTACCAAGT TTCTTATTAT GAAAATTCCA AGGGCCAATT 000320 000321 TTGAAACAAA CCAGGCAGAG ACCCAGATGC AGAATCCTGC AGGCTGAGGG ATGTTAGGAA GAGTTAGCCC ACCACTGCTG 000400 000401 CGCTGAAACC AGGATGACGC AAACTGGGCC TCAGGCCAGG ATCAACATCT TGTCTAGACA GAGAAATATT GATGGAGATC 000480 000481 AGAAAATTTA TTAGAGTATT TGAAGGTCTT GTGGGACTGG AGAGACAACG TTGGACACTT AAGTGGAAAA TCTGACACAT 000560 000561 AACAGAACTG AGACTATCAT TGTATTTTTT AAAAATAGTG GTTTTTGACA AACTGCAAAG GTTGCACAGT GGAGAAAAAA 000640 000641 GTTTTTTCAA CAAATGGTTC TGAATCGATG AAATATCTAT ATATGTTTTT AAAGTGAGCT TGAATCCATA ACATTGTACC 000720 000721 ACATAAAACA TTAAAGCAAG ATGTGTCATA AACATAAAAG TAACTCATAA TTATACATTT TCTAAGAGAA AATATGGTAA 000800 000801 AAATGTATTT TTGTTAGGTA AAGAAATAGA TAGTATGATA AAAGCATGAG CGTACAAGTG AATAAGTTAG ACTTTATCAA 000880 000881 AGTAAAAACT TCTGCTCTTT CAAAGACATG CATGAGGAGA ATAATAAGAA AAGCCACACC TTAGAAAAAA AATTTCAAAA 000960 000961 TATATCTTAT TACAAACTGA TATTCAAAAT TTAAAAACAG CTTTATAAAC TCAATAAAAA GAAAACAAAT TATTTTAAAA 001040 001041 TTGAGTAAAA TATTTGAATA AACTCTTTAC CATAAAGACA GGTGGATGGC AAATAAGCCA TTAATAGATG CTGAGTCATT 001120 001121 ACAGAAATAC ACATTAAACA CAAAGTGAGA TAGTACTGCA CACATATTAG AGAAGCTAAA AGTTAAAAGA CTGTTGATAT 001200 001201 TAGGTTGTAA TAAGGTGAAG AAAATTGGAA CTCATACACT TCATGTGGGA ATGTGAAGTG GTAAAAGCAC TTTTGAAAAG 001280 001281 CAATGTTTTG TGTTTGACAC AAAAAGTGAT AATAATTTTA AAAACAGACT ATATTAAGAT TATAATTTCT TTTCACCTAA 001360 001361 AGATACACCA GTTAGACAAT GAAATGGAAA ACCACAAAAT AGTAGAAGAT ATTTGCAATA AATATACCTG ATAAAGATAT 001440 001441 TATATTGAAA AAATATAGAG GTCCTACAAA TCAATAAGAA AAAGCCAAAT ACAAAAATGT GCAAGTGACT TACACAGAAA 001520 001521 TGTTATACCA GACATCAAAA AGGAAAAAAA AATTCACTAC TTCGTCATTA TACAAATTCA TAACATAATG CCAACATATA 001600 001601 CTCCCAGAAT GGCAAAAATG AAAAAGAAGG CAGTTACTAT AATTTTTCAG TGGGAATGTA GAACAACTAG AGCTAACATA 001680 001681 ATGTGTTGAC TGAAAAGCAA AGTGTTTTAC AACCTTTGGG AAAATTCATT TTTTTAAAAT TTTAAAGCCA AACATAACTC 001760 001761 TTAGGCATAT ATCCATATGT ATATATGTTT GGCTGGGCGT GGTTGCTCAC GCTTGTAATA CCAGCACTTT GGGAGGCTGA 001840 001841 GGTGGGCGGA TCACGAGGTC AGGAGTTCGA GACCATCCTG GCTAACACGG TTCCTGGCTA ACACGGTGAA ACCCCGTCTC 001920 001921 TAGTAAAAAT ACAAAAAAAT TAGCCAGCCT TGGTGGCGGG CGCCTGTAGT TCCAGCTACT CAGGAGGCTG AGGCCCGAGA 002000 002001 ATGGTGTGGA CACGGGAGGC AAAGCTTGCA GTGAACCAAA TTCATCAAAA AGGAGATCAT ACTGGGTAAC CTTAATCAGA 002080 002081 TGAGCTCTTT AAAAGAGAAT CCAGACATTC CCTGTAGAGA AAGATTTGAA AGTAGAGTTT CTCCCACTGC CCTAGAAGAA 002160 002161 ACCAGTAACA ATACTGTGAA CTCCCTATGA AGGGGGCCAT GGTACAAGCA ACTGAAGGAG GCCTCTAGAA AGTACGAGTG 002240 002241 ATCTCCAGTG GACAGCCAAT CAATAAACAA TAACTTTAGT CCTACAACCA CGTGAAAGAG GACTCTGAGC TGCAAATGGA 002320 002321 ATGCAGCCAT GACTAAAGCA TTGCTTGTAA CCTGGTGAGA TTCTGAGTAG TGGATCAAAC TAACTATACC CAAACTCCCA 002400 002401 ACACATAGTG ATTATGAGAT AATGAATTTG TCTTATTTAA CATCAATTAG TTTATTGTAA TTTGTTACAC AGAAATAAAA 002480 002481 AATGAATACA GAAAGTTAGG ATAATGCTTC CATTTGGTGA GTGGGAGGGG ATTACTGGGA AAGAAATCTA GTGGAGCTTC 002560 002561 TGAAATGCTA GTAATGTTCT ATTTCTTGAG TTTGGTATTA TATAAATAAA TATTGACTTT GTAGAAATCC ATCAACTAGA 002640 002641 TACTTTTAAT ATATACAGTC TTAGGTATGC TCTATATTAA TCTCTAAAAA AGAGATATAT AAAGAAAAAA TGAAAACAGA 002720 002721 ATGAACCATC AATATATATT GCATTGTTTT ATCTGCAGAA TAATTTTAAT ACACATATGA ATAAAACTAC ACATTCAATA 002800 002801 ATTTCATAAA TGTAGTTTTA ATAGTTCTTA AAATGGCTAT ATTTCTCAAT TAGTCTTTTC CTAAAGGTTT TCAGTCCTGC 002880 002881 TATAATTTTT CTCTTTTTTC AGTCCTGTTT CAATTTGTAT TCCATTTTTT CTTCCAAATA TGGCAAAAAA TAAGACAAAT 002960 002961 AAGTAATAAA ACTACAGCTA ATTTTTTAAT AAAATATCAC CACTCCTGTG ATTAAAATAC ACTGTATATT TATATATTTT 003040 003041 AAGTACCAAT TAACACTATT GCCTTTCCAT TTCAACTTTG CCAACAATAT TGATGATTTT AGAAATGGCT CAAGGAAACT 003120 003121 TTATGTGAAA AAGAGTTGCT CTATGTGGTT GACTCTGAAT AAATTTTTCC CACTCCCTTT TGAAAGCTTC ACTAACAAGA 003200 003201 TATAAATTCT CCATTTTCGA TATCTTACTG GCTAGTCTTG TGTTTTTGTT ACTGAATGTA CTATATTTTA TACGTGATAT 003280 003281 AACAGATTCA GTACTAGTGT TTAATTTTCT AATATTGAGT GTTTTTCCTT TCTGCTTTCA TGTGTTTTAA ATAAATGTGA 003360 003361 TGTATTCTGG GAGTCAATAT TTTTATACTA TCTTACAATC TATGATGATT ACAAATCTGA AATTTGAATA GACACTTTTA 003440 003441 GCTCTTGGCC ATTTTAAGAC ATTAAAGCTC ATTAGCAATC ATTTGTCTAC ATGAACTACT TTGTCTATAG CAAAACTGAG 003520 003521 ATCAAATAAA TGGTAGGAAA CCTGCCTAAA AATTTCCTGC TCTTCACACT AATTTGAATA TATCATCAAT TTTTACTAAC 003600 003601 AGATTTGATA TGATGGTAAA GAAAGATATT AAAAGAAAGG CTAAGTTGAA ATATGTACAT TAGCAGATGT TTGTTTATTC 003680 003681 AGTTGCCAGT AATTTCTAAA ATTAAATAAC TTTATTTTTA AATAATTCCA AGTGATGCAT ATTATTTCTT TTAAATAATT 003760 003761 AGAAATAATT GTTTTTGATT GACAAATTAT GATTATATAC ATCTATAGGA TACAATGTGA TGTTTTGCTA TATGTATACA 003840 003841 ATGTGGAATG AATAAATCAA GCTAACACAT |
Predicted Small Protein
Name | NONHSAT003940_smProtein_53:187 |
Length | 45 |
Molecular weight | 5295.8226 |
Aromaticity | 0.113636363636 |
Instability index | 89.6318181818 |
Isoelectric point | 4.70477294922 |
Runs | 9 |
Runs residual | 0.0414438502674 |
Runs probability | 0.0431608078667 |
Amino acid sequence | MHRCYTQKESEQLEDVEEPVWLWSQEFSKQLSEPESHAVKLVFS |
Secondary structure | LLEELLLLHHHHHHHLLLLHHHHHHHHHHLLLLLLLLEEEEEEL |
PRMN | - |
PiMo | - |