NONHSAT013232
Revision as of 10:11, 16 October 2014 by 192.168.72.52 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT013232 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1995 nt |
Genomic location |
chr10-:48737040..48827934 |
Exon number |
5 |
Exons |
48737040..48738686,48739388..48739450,48792687..48792799,48795347..48795444,48827861..48827934 |
Genome context |
|
Sequence |
000001 AGGCTAGGCG TGGACCCAAC TGGCGAGGCT GCTGGGGTTG CAGCGGGACA GTTGGGGCGG CCCCGCAGGC CCAGGTTTTT 000080
000081 GAAAATAAAG TTAATTCAGA GAAGGTAAAA CTTTCTCTTC GGAATTTCCC ACATAATGAT TATGAGGATG TTTTTGAAGA 000160 000161 GCCTTCAGAA AGTGGCAGTG ATCCCAGCAT GTGGACAGCC AGAGGCCCCT TCAGAAGAGA CAGGTGGAGC AGTGAGGATG 000240 000241 AGGAGGCTGC AGGGCCATCA CAGGCTCTCT CCCCTCTACT TTCTGTTCAA CATCATGGAT ATAGTGGCCC AAATGAGAGA 000320 000321 ACAACGTTCT GGCATGGTTC AAACGAAGGA GCAGTATCAC TTTTGTTACG ATATTGTGCT TGAAGTTCTT CGGAAACTTC 000400 000401 TGACTTTGGA TTAAGAAAGA CTTCTGTTGC CTCTCACTTG AAATTACCAA GTGGGTTTGC ACCTCCTCAT AAAGAACATG 000480 000481 TTTGCACTGT GCTGAAGGGC TTTGCTATGC ATACAATCTG CTTTCTTGGT TTATCAGTTT ATTTTCTTTC TAAAAGCTCC 000560 000561 CTGAAGGGCA ATATCATTTG GCTTGGGGTG ATCAGTGTTT ACTTATTGAT CTTGCTAGAC AATATCAAAA TAACTTCCCA 000640 000641 CATTTTCCAG TGAAACAGAT GTTACATAAA ACGATTGCAG CTTGGCTATT TGGTTGAAGG GATTACAGAG CCCAATAAAG 000720 000721 GATTTAAAAT ATATTCATTA AGATTTTATT TGGAAAGGTG GCTGGAGAGA GCTGAGGATT TCCAGGACTT TGTAAGTTCT 000800 000801 TATTCTGGGA GAACATAAGG CCAATAATCA TGACCTCTTC CAGGCATTTT TAAGACAGAT GTCTATTCAT GTTCTTTAGC 000880 000881 TAGAGCCTGT ACTTTTTGCT GGCATTTGAA TAACCCAGTT TAAAAAGAGT CCAGTTAGGG TGGACTAACT TTGGACACAA 000960 000961 ATTGGCTTCC ATTTCCTACA TTTTCATACT GCTGCCTTCC TACAGCTGCT AGACCAAGAC CTGTTGGTCT GGGAAGCATT 001040 001041 TCATGGATAG GGAGAGCTCC TCTCGGTGAA CAGTCCAAAA CTAAAATAGA TGTTTATATA GAAAGCCCAA GAGGAGACTT 001120 001121 TTGCCATGCC TGAGTTCTTT CCTATCCCAC CCTAACACTT AACATATTAC TTAGTCTGCT TTGTTAAAAG CAAGTATTAC 001200 001201 CTTTAACTTG CCTCTTACTC TTTGCCCTTT AGCTAACTAA TAAAGTTTGA TATAGGCATT ATTATATAAT TCTGAGTCAT 001280 001281 TCATGGTATC TCTCATGTTT GATGTATTTT TCAAACTAAG ATCTATGATA GTTTTTTTTC CAGAGTTCCA TTAAATCATT 001360 001361 TATTTCCTTT ACTTTCTCAC CTCTGTTGAA ACATTTAGAA ACTGGATTTG GGAACCCAAT TTTGGAAAAC CAGATTCATA 001440 001441 GTCATGAAAA TGGAAACTTC CATATTCTGT TTTTGAAAAG ATGTGGCCAT TATTACAGTA ATTTTATTAT AGGACTTTGC 001520 001521 CTCGTACAAT TAATAGTGAT ATTTTGGACA AGGAGTTCTG GTGACAAGCT ATACCTAATT ATAAGCTATA AAACAATAGA 001600 001601 TATGAGTGTT TGTACAGTTT AACTCAATGG AGATCAGAAT ATTCTATGTA TTGAGAAAAT GTTTAATATC AATCTATAAA 001680 001681 TCTTGAATTT CTAAGAGGCT TATTTTGTTC TTTTGGCTGA ATGAGTATAT TTGAATTGGT TGAATAATTA ATAATTCTCA 001760 001761 TTGTAAAAAT AATTATATGC CAAAAATATA TTTGATGTTA AATCAAATAG ATGATTCTGT TTACATTGTT CATATGAATA 001840 001841 ATAATCTGTG TTAATTTCAT TTTGATAATT GGCCTTTAAT ATTTGTATCT CTAATTTTAT TTTCTCTCTG TTACTGTAAA 001920 001921 ATAATAGCTA TAATGTATAA CAATTTTCTT CAGAAGAATT CTATGCtatt attaaaataa aatatttaCT GTGTA |
Predicted Small Protein
Name | NONHSAT013232_smProtein_188:382 |
Length | 65 |
Molecular weight | 7174.7921 |
Aromaticity | 0.109375 |
Instability index | 54.471875 |
Isoelectric point | 6.24407958984 |
Runs | 9 |
Runs residual | 0.00796875 |
Runs probability | 0.047527920077 |
Amino acid sequence | MWTARGPFRRDRWSSEDEEAAGPSQALSPLLSVQHHGYSGPNERTTFWHGSNEGAVSLLL RYCA |
Secondary structure | LLLLLLLLLLLLLLLHHHHLLLLLLLLLLLEEEELLLLLLLLLLEEEEELLLHHHHHHHH HHLL |
PRMN | - |
PiMo | - |