NONHSAT023443
Revision as of 05:59, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT023443 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3871 nt |
Genomic location |
chr11-:85389665..85393535 |
Exon number |
1 |
Exons |
85389665..85393535 |
Genome context |
|
Sequence |
000001 GTTTGATCCT TATTTGCCGT TTTGGAGATC CTAAGTCGTC AGATATGGGC CATTTTATAA GGTTCACCCT AATGCCCTTT 000080
000081 CGAAAAATTT TGAAAGTGGG AAATGAGAGT AGAAAGCCAA AGATAGATGC CTCTGAAGAA CAACCGAAGA AGAGCCCACA 000160 000161 ACATAGACTA AGAGAAATGT GCACCTATCA TGTGTCAAGG TGCTtttcat tccaccctca taacaacttt tcaagggagg 000240 000241 ttcaattatc gcaattttac ggatgaaaaa aaagggagac taagagagga tgacttgtcc aaagccagga aggtttggag 000320 000321 aggcaaaagt gagttttgaa cctaaggccc tgGGTATGCC GCCTACACag gcccccacac ctggtttaat gctcactgtt 000400 000401 gctgtcgcga aattcttatt tattttttaa caagcggccc catattttat tttttgttct gggtactatc aaggaagtag 000480 000481 ctgggcctgT TTTCTGGCTC TAAAACCCGT GCTTTCTCCC AGTATACAAA CTATTCTTCT TAAGAGCCTT AAAAAGGCAT 000560 000561 TGTTTTCTTC CTCTGTGCTC CGTGGTACTT TGTATTCCAC TCTGTCAGTC CTCATATTTA ATCTGTGACC CAGAGCCTAT 000640 000641 TAAGGGGATA AGCAACCAGT TTATCTATTA TGGTATGTTG CTCTATTAAG TGATGCTTAT CACTGGAACA AACTGACAAA 000720 000721 ATGTAAATCG GCCTCCTCCA AACTACTGCC TTTGAGGGGA AATTTAAACA ACAACACTGT TTTCTAAAGC AGACCTATAT 000800 000801 CCCTGCTGAA TTTTTCTGCA ACATCAACAA ACAGTAGCTC TCAAACAAAA GCAGAACAGA GATCCTAAAA GCAAATAATG 000880 000881 TATGAGTAGT GCCGTGTAGC TGATAGGTGT GACTTTTTGT TCCTTAAACT GTGAGCTCTT CAGGGTGCCC TAAGGAACTT 000960 000961 GTCTGGTTCC AAAAAATTAT GAAAGAGAGC TTGAAAAGAG GAGAGCTACA GGAGAAATGA ACTGACTGGT ATTTTCAGAA 001040 001041 TACTGACTCT GCTTCAGTTA GAGAAAATGA ATTCAAGTTA GTTTGTTTCT AGTAAACAAA ATATTAATAG AAAATCTTTG 001120 001121 TCAACCTGAC TCCatatatt aaataattat ttaaaGAAAG TTGTTTGAAG GAGTACCTGC CCAGGTGCCT GCTGTTCTAC 001200 001201 TCAGCCCTCC TTTCCCCAGA TACCCATGAG GTAGCTGTGG GCTGAGTCAG GTCAGGGATA TTCTGCTTTC CACTGTGACA 001280 001281 AGACCAGCAG AGTTGGGCAG ACTTGAGATA TCACCTCTTG GTCCACAAAG AAAAGAGGAT GATGACTCTT AACTGCTCCC 001360 001361 CTAAAAGCCT ACCCTCCccc tccagacagc ttgtctgcca gtgtcattgg ccaaaattgg gtcatatgca aatacctcag 001440 001441 ccaagcttct tcatagggca tgttgccagc atgattgatt tagaccaatc aggatccacc ctgagatggg aatgaggcca 001520 001521 gtctgtgcta catagtggac gggactacct ggcaaaggca gggctctgcc agcaggaatg atggaggatg gatattggat 001600 001601 ggaccatcaa tagtgcctTC TGTGCTACAT CTATTTAGAC TGCCAGAGCC TTATCAGGCA GGGAGCCTTT TTAAATCCTT 001680 001681 AATCACAAGT CTTGGCCTCT TAAAAAAGTT ATTGGAATTT GGGGAAGTGG CTGAGAATAA GCTTTTCTAA TCATTGTGTA 001760 001761 TTCCTAAGGA CAAATTGGAT GTTATTTTCT AAACACTAAA AACATTAAAC TTAGGGACAC CTAGAGCTGT ACAGATGAGT 001840 001841 CTCCCTACTT GATGCTGTTC TCTCTAAAAC CTTCTGTTTA TTCCACTTGG GAAAAATGAA TCCAAGAAAA AACTTGTTCT 001920 001921 TGCACAGATC TGTCTGGTCA TTCATTACAC ATTCAACTGA CTACGGTGCC CTCACAACAC CCTTACTCCC CAGTCCCACA 002000 002001 GAGGGACTCC TGCCTTAGCT ACTTGCCAGA CAGTTCCCAC TTGATGATCT AATCCACTCT TATTTGTACT AGTCTAAAAT 002080 002081 AATCTTCACT TTCatgttta aggttattca ttacatcatt gttacagcaa aagattggaa atagcttaca taccatcaat 002160 002161 agggaacagg ttatatacca tcaataggga acaggttcac actttggaac acagtgcaac tgtaaaacaa aaggaaaagg 002240 002241 aagctgttaa tgtattgata tagaactatc tccaggatat atgcagaaaa aaacacaaca agctatagag caatatccat 002320 002321 attatactat attctgtgta agggggagag gaGGAGAGGG GTATTAGCAT GCAAACATTT CCAGCTGCAT AAATGAATAT 002400 002401 TGGGAAAAAA GTTGTTCTTA GTGGTGTGGA AGCATATAGG GAATGAGGTG GTCAGGGTTA GGAATGGGAA AGAAACTTCT 002480 002481 TAATGTATAC CATTTTATAT CATTTGACTT TTGAACTATG TGAATATATT ACCTATTCAA AATATAGTAA AATTGAAAAC 002560 002561 AAAAATAAAA GAATCTTCCA CATATCTGTT TAACTTCCCA ATAAGCTATA TTTCTGTTTA GGCAATTCAA AAGCCTGCAC 002640 002641 ATTTTCCCCT CTCCAAGAAC TGGGTAGGCA CGGCATATTT TAGATAAAGC CAAATATGGC CTGACAGATC TGGGTCAGGA 002720 002721 CATTCAGCTG GAAGCTGCTG CTTCCACAAA TGTTCAACCA CATATGGCTA ATGACAATAT CTTTTTCGTC CCTAAAGAAT 002800 002801 GCCTCCCAAT GATTAGTATT TCTCTCCTAG AGGTTTGGAT GTGTTAGCTT CTCTCATGGA TTTTCACGTG TCTGTATAAA 002880 002881 TCTTAGATTT TAGAGAGCCG GTTTTCTTAT ATACTCAAGC TTTTAGGATT TTGGTATTCA TTTTTGTTTT TATGCTGACA 002960 002961 TACCAACAAA AGGTAGTGGA GGTAGATCAG CCATTCTGAT CTTTCATTTC TGATCTTTCT GATCCTAATT GCTAACTCAT 003040 003041 TCACTGAATA TATTGcatta atttaacaaa tatttattga gaatctatta gccaagacac tatgctaagt ggtaggatac 003120 003121 aatgtgagca agatagagac cttatcttca ctgactttgc atccttctgg atgagaaaca tgctgaacaa taggaggaca 003200 003201 tggaagtgca tagcaggttc ctccagccta atgtaggagt gattagagga cgcttttcct ggaagtggat gtaaggtatc 003280 003281 tgtagaatgt gtaaagactg tccaagagaa gaggAAAACA TGAGAGTACA GTAGCTTCGA AAGCTTCACA GTACCTCCTG 003360 003361 TTCCTGATCA AGAAAACTGC CTTTCCAACA GCTGTACCAT TCAGGGCTGC AGAATAAGCA GCTCCAAATA GACTCAAGAG 003440 003441 ATTCTCTGGC CAGATTAATC CCATTATGCT CACATCCACA TTTACCTTAG TCCTTTCCAG AAGTCTGAGC CTTCATAAtc 003520 003521 ttactcaatc cttcccctcc cccaccacca ttcccatgca aactctttga gagagccctt tggaaactca gatctatgat 003600 003601 cagcaaaCCA GCTGAagtat tagtgcagta agcaaaaggg tgcattggca taagactgcc tagatttaaa tcctggctgt 003680 003681 tactgggtga ccttAAATTA GGTCTTAGTG GGTGAAGAGG TACCCAGAAA GCTAAAATCT TCAGTAAGGA AGAGATATAA 003760 003761 GGATGACATG GCATGAATTT CAAATTGGTA TAACCATACA AACAAAAGAA TTATCCAAAA GGCTTTAGAA AACAGTATTT 003840 003841 TCAATGAATA TCCTTAATGG AGTATATTCC A |
Predicted Small Protein
Name | NONHSAT023443_smProtein_44:265 |
Length | 74 |
Molecular weight | 8767.0172 |
Aromaticity | 0.123287671233 |
Instability index | 57.8124657534 |
Isoelectric point | 10.0221557617 |
Runs | 11 |
Runs residual | 0.00653999116217 |
Runs probability | 0.0477509595157 |
Amino acid sequence | MGHFIRFTLMPFRKILKVGNESRKPKIDASEEQPKKSPQHRLREMCTYHVSRCFSFHPHN NFSREVQLSQFYG |
Secondary structure | LLEEEEEELLLHHHHHHLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHLLLEEEEELLLL LLLEEEEEEEELL |
PRMN | - |
PiMo | - |