NONHSAT032248
Revision as of 09:40, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT032248 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
972 nt |
Genomic location |
chr13-:19622134..19625817 |
Exon number |
3 |
Exons |
19622134..19622426,19624099..19624260,19625301..19625817 |
Genome context |
|
Sequence |
000001 TTACAGTCAC ATGCACGTGG CCAATCTGGA AAGACTTTCC AGTTCCCGGG AAAGGAGTTT CCCTCTCGGG TGGATGATTT 000080
000081 TGGGGCCTTC TCATTGTCTT CTGGGGGTGG AGGCCAGCAT CAGATCCAGT CTCCCGCCAG GGCCACAGCC AGCGCCTGGG 000160 000161 CTCGTTTTGC CCTCTGTGAT CCTGTGTGCT CCTCTGTGAA ACGGGAGCTG TGACCTGTGG CCCGCAGGTG GTGAGAGAGT 000240 000241 GTGGGACATG CCTCACAGAG CATGTTTCCT GCTCCAGGGG ACATCAAAAA GGGAGTCCCA GGTTCCCTCA CCACCTTCCT 000320 000321 GTCCCACCCC AAGAATGTCC AGCTTCGTGG AGCCACCTGA CACCATGAAG AAACTGTTCC GGGTAGAAAA CTGGCCAGAT 000400 000401 GATGCATTGC TGGCCAAGCC CAAAGTGACC AAGTCCTGCC TGATCTGTGT GAAGGACAGC TACACCGACT TCCACATCGA 000480 000481 CTGTGGGGGC GCCTCCGCCT GGTACCACGT GCTCAAGGGG GAGAAGACCT TCTATCTCAT CAGGCTGGCC TCGGTCGACA 000560 000561 TCTCCTGTAT GAGTGCTGAT AGTCTGCCGC TAACCACAGC GAGATGTTCT TTGCTGACCA GGTTCACAAA TGCTACAATT 000640 000641 GCATCGTCAA GCAGGGCCAG ACCCTCTTCA TCCCCTCAGG CACTGACAGA GCTCTCGTGG GCCCCGAGCC CTGCAGCCTC 000720 000721 CCAGGGCGGT TGTCCCCTGG TCCACTTCAG CTATGCAGGG CCCAGTGGGG AAGCCTGAGC TGGTGTGTCT GGGGCTTGGA 000800 000801 CCCACCCCCA TCGTCGCCTG CTTGATGGTC AGTGCACTGA GAATGGCTCT TTGGTGGCTT CCAGAGCATA TGAAGTTGAA 000880 000881 AAGAGGTTGA AACTAGGCAG CCTGACTCAG TTTCCCAACT TCAAAACTGC CTGCTGGTAC ATGGGGAAGC ACCTGCTGGA 000960 000961 GGCGTTCAAA GG |
Predicted Small Protein
Name | NONHSAT032248_smProtein_752:889 |
Length | 46 |
Molecular weight | 4929.0795 |
Aromaticity | 0.0444444444444 |
Instability index | 50.3111111111 |
Isoelectric point | 9.38385009766 |
Runs | 5 |
Runs residual | 0.0511363636364 |
Runs probability | 0.0273979862215 |
Amino acid sequence | MQGPVGKPELVCLGLGPTPIVACLMVSALRMALWWLPEHMKLKRG |
Secondary structure | LLLLLLLLEEEELLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL |
PiMo | oooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiii |