NONHSAT047306
Revision as of 13:50, 13 October 2014 by 73.162.128.239 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT047306 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2284 nt |
Genomic location |
chr15+:75628362..75632614 |
Exon number |
2 |
Exons |
75628362..75628433,75630403..75632614 |
Genome context |
|
Sequence |
000001 GTGATCGTCG ACTCAGCTGA CCCTGCGGGA CCGGAAAAAG AAATTCCCGG GCCCTGGCTT CTTGGCGCGA TGAGGTTCCG 000080
000081 GTTCTGTGGT GATCTGGACT GTCCCGACTG GGTCCTGGCA GAAATCAGCA CGCTGGCCAA GATGGTTGAG TGCACAGGGT 000160 000161 CTAGTCTGGG TGGAGGAGGG GTGTTGGGGG TGGGGATTGT GGGTGTAGAG GATGGTGAGG TTTCTCTGGG GCTAGGGCCT 000240 000241 CAGTGCTCTC AGCCTGTGCT ACCATGCTTT GTGACCTTGA TCAGTGGCTG GCCTGCTCTG AGCCAGTCCC CAGGAAGGAG 000320 000321 GGGTGAGGTT TGCCAGCCTG GCTGATGTAA GGACTTCCCT TCCAGTCCTC TGTGAAGTTG CGGCTGCTCT GCAGCCAGGT 000400 000401 ACTAAAGGAG CTGCTGGGAC AGGGGATTGA TGTGAGTACA AGATCCAGCA CCCCATTGTC CCATGACCTT ATGACCACCA 000480 000481 CTGCCCTGAA ACTCTGCACT AGGCCCAGGG AGACGGGTGA GCCAGCCTCT CAACCTCTCT GGGCACCTCC CTTCCTTCTT 000560 000561 TCCAGCCTGT CTGTTCCTTA TCGCAGGATC CAGGCTGGGG GTGAGGGGCT GGTGAGCAGG GGCCTGGCAC CCCCTGAAGG 000640 000641 TCTCCTTTCC CCATAGTATG AGAAGATCCT GAAGCTCACG GCTGACGCCA AGTTTGGTGA GTATCCCGCT GAGTCTATAG 000720 000721 GCCCCAGGCA ACCCTGGGAA CTTGGCCTGG TGCCTGGTAC AGAGGGGCCC CCCACCCCTC CCAGCAGCAT CCTTAACTTA 000800 000801 CCTTCCCTAG TGGAGGAGCA TGAGGGAAAG AAAGACCGAC AGTCCCACCT TCCTGTCCTC TGCCAGCTCC TGGTGGAGCA 000880 000881 GTAGCAGTGC CTGTGGCTCC AGGAGGCCTG GGGGCTTTGA GCTAAAGTTA ATAGGGCAAC AGGGAGGTGG CTGGACCCAC 000960 000961 AGTGACACCC CCTGCCCCAC CCACGGGTCC CTCAGAGTCA GGCGATGTGA AGGCCACAGT GGCAGTGCTG AGTTTCATCC 001040 001041 TCTCCAGTGC GGCCAAGCAC AGTGTCGATG GCGAATCCTT GTCCAGTGAA CTGCAGCAGC TGGGGCTGCC CAAAGGTACG 001120 001121 GGTTGTGGGT GGGCAGCTGG GCAGCCTGTG GGCCAAGGGC TGCTAGAGAA GGGGACAGGC CCTGTGACCC TGAGGTGTAC 001200 001201 CTGCCCTGTC TGGGCCAGGA GCCCAAGCCA GGCCCCGACA TGCTACCTCC AGAGCTACTC CATTCTACCC CCAGAGCACG 001280 001281 CGGCCAGCCT GTGCCGCTGT TATGAGGAGA AGCAAAGCCC CTTGCAGAAG CACTTGCGGG TCTGCAGCCT ACGCAGTAAG 001360 001361 TATGAGGCCA GCCAGGGTCC GGGCTCATTC TAGAAGGTGC ACGCAGCACA CAAAGTgcat ggagagtcca gggagacgac 001440 001441 ttaaccacgg tcacatggtt actagcagcc gtagagctgg gacctggccc tgggtctcct gactccccac aaggtttctt 001520 001521 gtcactgAGG TCTGCTGTGG GTGATCAGAA CTGATTATCG GGCACCTGCC CTGTTCTGAG CCTGGGTCAG CAGGATGGGA 001600 001601 GCTTCTTAGA GGCCACATAG CCTTGAATGG TTGAGAGCTG AGCCAGGGTG TCGGCTGAGG TCTACTTGGC TTGCCTGCTT 001680 001681 TGATCCTGAG AGCCACCCAC CCCATCTCAC AGTGAATAGG TTGGCAGGTG TGGGCTGGCG GGTGGACTAC ACCCTGAGCT 001760 001761 CCAGCCTGCT GCAATCCGTG GAAGAGCCCA TGGTGCACCT GCGGCTGGAG GTGGCAGCTG CCCCAGGGAC CCCAGCCCAG 001840 001841 CCTGTTGCCA TGTCCCTCTC AGCAGACAAG TTCCAGGTCC TCCTGGCAGG TGAGGCTCAG CTATTCCTCG ACGGGTGAGA 001920 001921 GGCTCTCCCA GATCCGCCTG ACTGCCTCCC ACCTGCCCAC CTCTTCCCTC TGCAGAACTG AAGCAGGCCC AGACCCTGAT 002000 002001 GAGCTCCCTG GGCTGAGGAG AAGGGTGTTC CAGGCCTGTG TGGAGCCGCC CTGCCCGTAT GGAGTCACGC CCTCTGAACT 002080 002081 GCTCTTCGGG AGGCAGCCCT GGTTCTAGGA TGCTGAGGCC CTGGCCCGGA CTCTGGCCTC CCAGATCCCC AGCTGCCTCA 002160 002161 CTTCTCTCTT GAGAACTTGG CTCAGGGCTC CTGAGGACCT TTCCCAGCAT TACCTTCCCT TCCCTTGAAA GGCAATTGTT 002240 002241 GGCTGTTTTC ATAAGCAGGA AAAATAAACA GAAGTATAAA GGAA |
Predicted Small Protein
Name | NONHSAT047306_smProtein_1301:1501 |
Length | 67 |
Molecular weight | 7454.548 |
Aromaticity | 0.0454545454545 |
Instability index | 83.2878787879 |
Isoelectric point | 11.8607788086 |
Runs | 9 |
Runs residual | 0.0142442387951 |
Runs probability | 0.0279200769397 |
Amino acid sequence | MRRSKAPCRSTCGSAAYAVSMRPARVRAHSRRCTQHTKCMESPGRRLNHGHMVTSSRRAG TWPWVS |
Secondary structure | LLLLLLLLLLLLLLLLEEEELLHHHHHHHHLLLLLLEEELLLLLLLLLLLLEEELLLLLL LLLLLL |
PRMN | - |
PiMo | - |