NONHSAT059045
Revision as of 09:07, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT059045 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1710 nt |
Genomic location |
chr18-:39060236..39100561 |
Exon number |
6 |
Exons |
39060236..39061231,39061846..39061921,39062409..39062541,39081084..39081240,39096384..39096519,39100348..39100561 |
Genome context |
|
Sequence |
000001 TGGAGCCTGT CAGCTGAGCA AAGGAGGGAA ACTCAGGATG GAGAACTCCT CCCCCTCCAT CCATAAGTGG CACACCACTG 000080
000081 GCCTCCTGGT GTTATTAAAG GAAAATTGGA AAAGTTTCCA GAAGATTAAG CAGAAAGCTT ACAACTTGCA CAAGACTCTC 000160 000161 AATTTTCCAG TGGCTCTGAC AGAAGGATAA ATCTTCGGCT GTTTTAACTA AAATGGACGG TCAAGTTGGT ATCCATCGTG 000240 000241 AAGCTAAATG AATATCTGGA CAGGAGTCAG ACAAAGGGAA GGAGAATCCA GGGGAAGATG AAGCAGCTGC AGGCCTGTCT 000320 000321 GCTACCCTAT ATCCGGGGAA GAGCCAGAAA TTGCTGACCA TAGAGAGTTA CATTGTCCAG CTTTTCCTCC ACGAAATGGA 000400 000401 GCAGCAACAA AAGGCCAGAT CATTCAACCT ATGCTTCCTC AAGTCTGATA ACATTAGCGT TTCTCTCAGA TATCAGTTCA 000480 000481 AGTAAGGAGT TGCCAATAGA AGCAAAGATG CCAGGAATCA TCGTTTTTAT TTCAGTGTCC TTACGAAGAC CTTTGAGCAC 000560 000561 AATGGAACGA TGAGGCAACA TTAAATATTA CTGGAATGGG GTATGAAAGC AGCTACTAGA AAATCCTGCA AGAAAAATAG 000640 000641 ATGGAGAAAC TGAGTGCTAA GAGTCTTGCC TTTTAGCTGT CAACAGTTTG AAGATGAAAC AAATCTGGAA CAGCTGATTT 000720 000721 CTATTGTGGC AGCTATTACC CATTTTTGTT ATGCATCTGT CTCTTCCCAG ACTATAAATT ATTTAAGGTG TGAGTCGGAG 000800 000801 ACCTAGGCAT TTCTTATGGC CAGAACCTTA AGCAATGTCT GGGATATAGC AGATATAACA GACTCTCAGC TATTGCGTGA 000880 000881 ATTAAGGAAT GAGCTTGAGA AATACTTTTA AGTATTTTCT TCCTGGAAAA GAGACTCCAA CTGTCTTTTG TACAGTGCTT 000960 000961 GAAACTCATA CCATTAATCA CTCTTTGAGA CTAAAGCTCT GATAACCTGA GTGAAGAATT GGTTACAAGG ACGTTACAAT 001040 001041 GCACCATGCT ACCTTCAGCC ATTTGTGCTT CTGCATAAAT TGTTTTGACC GATTAGCCAA TCAGTCACCA ACAAGACCCA 001120 001121 AAAGGAATGA GAATCTAAAC AGATTGTCAC CATTTGGTGG GTTTGAACAC CAAGAGGATA GAGCCTAGAG CATTGTGGTC 001200 001201 TGCTTTAAGA CTTCTGAGAG GCAATAAGGT AAGGTCTGAA AAACCAAGAG TCGGGATAAA CAAGTCAATT GTGTATACAT 001280 001281 GGAGGTGGGA TGAATAAAGA GGAGGAGGGG TTGATGGAAG AAAACTGCAC CCAAAATTAT CGTGTGTCAA AGGCTGGCTG 001360 001361 TGGAGCCGAT CTTACAACCT CAAATAATGT GATCATACTA TCACTCAGCA TAATTTGTGC CCCCCAGTTT TGTATGTCTA 001440 001441 GGCTGCTTAG GAAATTGATG AATAACAGAA GATGCCACTT ATCACTGAGA TGAACCAAGT CATCCCAGAG GGAGTACTAT 001520 001521 TTGAAGATGT GTGGAACATT CTGTGAATAT AGAAAAGGAT CCCATACCAT GATTCAATTC ATGACTGTGG CTAGTAGAGA 001600 001601 TCCACATTTC ATGTTTTGCT ATCCATGGGA TTTAAATCTG CTGTCACTCT CCTTCCTATG CAGCTTAGAT TGCTTGACCT 001680 001681 AACATTACAA TTAAACCTTA CATAAATGCT |
Predicted Small Protein
Name | NONHSAT059045_smProtein_1289:1492 |
Length | 68 |
Molecular weight | 7619.8543 |
Aromaticity | 0.0298507462687 |
Instability index | 65.928358209 |
Isoelectric point | 8.75103759766 |
Runs | 11 |
Runs residual | 0.0208642650621 |
Runs probability | 0.0408536879125 |
Amino acid sequence | MNKEEEGLMEENCTQNYRVSKAGCGADLTTSNNVIILSLSIICAPQFCMSRLLRKLMNNR RCHLSLR |
Secondary structure | LLHHHHLLHHHLLLLLLEEELLLLLLLLLLLLLEEEEEEEEEELLHHHHHHHHHHHHHLL LLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL LLLLLLL |
PiMo | ooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiii iiiiiii |