NONHSAT071117

From LncRNAWiki
Revision as of 18:22, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT071117

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1722 nt

Genomic location

chr2+:64687999..64697120

Exon number

4

Exons

64687999..64688058,64693404..64693723,64693816..64693928,64695892..64697120

Genome context

Sequence
000001 TTCTGCAATA ACCAAAACCA AGGAGTATAA ATAACAATCA GGCTCTGGGG GAATAGAAAG CTGGAGCAAA GAAAGGCCTG 000080
000081 CTTTGTGGAC TATCTACAAG GAATCACAGC ATACATGCAT TGAATGTACT CAAACTTCAG CTCCATGCAT TTATCACCAA 000160
000161 AATATAGAAC AAAGCAAAAA ACTGTTTAAA CACTATACAT GGGTGCCATG GCTCATGCTT TAATCCCAGA GCTTTGAGGG 000240
000241 GCCAAGGCAG GAGGATCACT TGAGGCCAGG AATTGGAGAC CAGCCTGGCC AACATAGCAG GACCCTGTCT TTAAAAATAA 000320
000321 AAATAAAAAT AAATAAATTA TCTAGATGTG GTGGCACGTG CCTGTAATCC CAGCTACCTG AGACTCTGTC TCAAATAAAT 000400
000401 CAATAAATAA ATACCACAGG GACAATTCCA CCTGTCATCC CATTGAAAGA AAAAGGAGCC GAAGAATGGG GATGTGATTC 000480
000481 AAATGTGCCT TCATCCCTTC CATCACCTAC AAAAAAAAAA AAATAAATGT TTGTTGAATG AATGAATGGT AGCCAAGATG 000560
000561 TGGTATTCAT TATATATCAC TGTGCAAAAA ATTATTCCAA AATTTAGAGG CTTAAAATGA TAACAAACAG TTAAGATCTC 000640
000641 ACAGAGTTTC TGTCAGGAAA CTGGGAACAG CTTAGCTACA TAGTTCTAAC TCAGGGTCTC TCAGGTTATA TACAGTTAAG 000720
000721 CTATCAGCCA GAGCTGCAGT CACTTGAAGC CTTGATTGGG GCTAGCGGAT TCACTTTTCA ACGTGGCTCA TTCACATAGC 000800
000801 TGTTAGCCGC ACGAAATTCT CCACAGAACT GCCTGAGTGT AGTCACAACG TGGCAGCTGT GTTCCCTTTA GGGACTGATA 000880
000881 CAAGAGTGAA CAAGGTAGAA GCTGCAATGT CTTTGATGCC CTAGCCTCAG AGGCCACCCT TCCACAATAT CCCATTTCTT 000960
000961 ACATAGGTTA GCCCTATCCA ATGTGAGCAG GAACTACACA AGGTATGAAT ATACCAGGAA GGGAAACTGT TGGGAGACAT 001040
001041 CTTGGAGACC AGCTACACAG ATGGCTAATT CTTGCAAATT CTCAGAATTA TTTGAGTGGT TGTAGAATTC CTAGAAGGTA 001120
001121 AATGACAGTG GAGCCAGAGA AATGCTGTTC ATGGCTATTA TGTTTCCCTA GTATTACAAC CCCCACCCCC TACTACTGTT 001200
001201 GCCTGGGATT AGTGTTTTCT ATAGAATGTC TTCACTTGTA CATCCAGATC CTCAGAGTAA ACTATAACAA AGAGAGCATG 001280
001281 AAGAACCCAG AAATTCCTAG TGGATTGAAA ATAGCAAAAT TCCACTTATG AAATACGATG ACAAAGTCTT CCTAAAATTA 001360
001361 TGGTAGAGGG TAGAAAATCA GTTCTTATTG GGAACCTCAA ACAAACATAA ATGTTTTTGA GAAAAGTACT CAATTTTTTT 001440
001441 TTCAGTTCAA AGAGAAATGT AACTACTCAG AAAATGTGTG AGTTTTCCTT GTCTTCAAGT TTGATGTTTG GTTTTAATGG 001520
001521 AATTGGATAG GAAGATAGAC TGAGGTAGCA AAATCCATTA GTAGCCTGCA TCAAAGGGCT CAGATTCAAA TGCCTACAAG 001600
001601 GGGAAAACAT GTGATATTAA AGAAGCAAAA TGGGCCACAT GGGCAGCTGC CACCCAGACC TAGCCATTGT TGCCATAAAT 001680
001681 AAATGTGAGC CCTTTATTGC CAAAGCTTCT GGATTTTCTT TT
[back to top]

Predicted Small Protein

Name NONHSAT071117_smProtein_1121:1330
Length 70
Molecular weight 7969.4524
Aromaticity 0.115942028986
Instability index 58.8376811594
Isoelectric point 7.58673095703
Runs 9
Runs residual 0.0088965418281
Runs probability 0.0587548332647
Amino acid sequence MTVEPEKCCSWLLCFPSITTPTPYYCCLGLVFSIECLHLYIQILRVNYNKESMKNPEIPS
GLKIAKFHL
Secondary structure LLLLLLLLEEEEELLLLLLLLLLLLLLLLLEEEEHHHHHHHEEEEELLLLLLLLLLLLLL
LLLEELLLL
PRMN LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL
LLLLLLLLL
PiMo oooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiii
iiiiiiiii