NONHSAT087920
Revision as of 10:38, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087920 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1765 nt |
Genomic location |
chr3+:10322636..10335133 |
Exon number |
5 |
Exons |
10322636..10322686,10327432..10327537,10329098..10329165,10329629..10329786,10333752..10335133 |
Genome context |
|
Sequence |
000001 ACATGGAAGT CTCCAAGCCT GTGCCATCCA CCTGCCAAGG AAAAGCACAA GCATACAGTT TGAACATTTA TTCGCCTCCT 000080
000081 GAGCTTGTAC AACAGTCGTG GGAGTTGCTG CAGAAGCAAG CGAAAAGCCA GATGAGCGCT TCTAAACTTA GAGAGAGGGA 000160 000161 GAGCGCCTCA TCTCTTCCAT TTTCCAGGTA TTCCTGAGAT GATTTATTGG AGCTCAAAGC TTTGGGAGAG TTGGGGCCTT 000240 000241 CCATTCCCTC CAGTAAATAC TTGTTTTTCT TCCACCGCTG AGGCAAATGC GGGGTGGCTG ATCACCTGGC AGACATCTTA 000320 000321 GGAAACAGGA GCACCGGTCT GGGAAACTGC TGGCCTGGCC TAACACCTGG CGCTGTGGTG CAGGAGGGCA GCCACTGAGG 000400 000401 ATTCTTGAGG AGAGAGAGac catagaatga atgaaagagt tggaaagact ttaaagctct gggaggctga atcctttatt 000480 000481 tcgctggaag aaaaactgaa tgccaagagg gcctcacttt ccccaaagct atacagccat caggggcaat gctgggattc 000560 000561 ccccatggat ctcttgactc ctaatacagt gctctttctg atatgccatc tgGCTCCATA ATGAACATTG TGTTCCAGGA 000640 000641 AAATCAGTCT GCGCTGAACA GGATGGAATT GGGGCAGGAC GTCCAGTGAG GAGGACATTG AGGCAGTAGA GCAGTTGATT 000720 000721 GCCGAATGAC CACCTACCCT GACTTAAAAG ATCAACCTCA GGGAGGATTG GAGCTTTCTA GAGTCTCTTG GGACAGCAGA 000800 000801 AGCACAGGCC GGGTTGGACT GAATCTTTAA GTGGACATGA GGGACAAAGT ACCTCCTGTT GGTAAACATC TCACCACCAA 000880 000881 CCCACTGTGG TGGCTAAAAT CCCACCTTTA GTCCCAGCAA CATATGAGCA TGTCACCAGG AGGTCTTCAC AGGCCTGTCT 000960 000961 GCCACCTGAG TGTAGACATC TTTTGGCCCT GGAGCCCAGA GAGGCTGAAT GTGGAGAGGG TGGAGAGAGG TCTGTAGTCC 001040 001041 TCAGAGAAGA CTTGCAGCTT TTTCAGAGCC ACCAACCCAT AAAAAAAAAA ATCCCCAAAC AGAAAAATCC TAACTGTGGT 001120 001121 GACCAGGTAC CTCCTGAGAC ATGAAGCCTC CACTTACCTG GACCCTGGAG GCCTCTCCGG GCACAGCTGC CAATGTTGAT 001200 001201 CTTAGATAAG ACCACCAGCA AGTAAACATC CACTGTGCAA AGCTGTGTTA TCTTTGGGGA ACTGAAATGT CCCCTGGGAG 001280 001281 TTGGAAACTC CCCTAGCCAC ATACCACAGA GTTGAGGAAG GAAGAGCTGA TGGACGGAAG AACCATGGCG GGAGGAGTCA 001360 001361 TCCGGAAGCT ACCTCGCTGC CCTGTCAGTT ACGGAACAGA GGAGAGATGC CGGCTGGAGG ACACAGCAAA TTTGAACCAA 001440 001441 GAGGAGCTTG GAGGAAGCCC GAGCGACCTG GAGGGGACTG GCTGACCTTC CTCATTCTTT TCAAGTGTGA ATAATAACCA 001520 001521 AGCCCAGTTT GGCAACTCCT TGAGGGTGAG GACGAAGCCC CATTCTCCTT TTTGGAACTT GGTGGGGCTC AGGAAGCAGG 001600 001601 TTCTCTCCAG TCGGTGGCTT TCCTTTCTGT TGCGGGTCTC TTGAGGGCCT GCCTTCATGA AGGCACATGA GTGACTCATC 001680 001681 ATTTGTGAAT TAATTGCTAT ATGTGAAGGG CATCTGAGAA CAAATTATCT TCATAGACTT TTCATTATAA TTTTATTTGT 001760 001761 ACTGA |
Predicted Small Protein
Name | NONHSAT087920_smProtein_2:196 |
Length | 65 |
Molecular weight | 7193.0709 |
Aromaticity | 0.078125 |
Instability index | 78.734375 |
Isoelectric point | 9.30072021484 |
Runs | 7 |
Runs residual | 0.03921875 |
Runs probability | 0.0353042117748 |
Amino acid sequence | MEVSKPVPSTCQGKAQAYSLNIYSPPELVQQSWELLQKQAKSQMSASKLRERESASSLPF SRYS |
Secondary structure | LLLLLLLLLLLLLLLEEEELLLLLLHHHHHHHHHHHHHHHHHLLLHHHHHHLLLLLLLLL LLLL |
PRMN | - |
PiMo | - |