NONHSAT092429
Revision as of 12:25, 13 October 2014 by 73.162.128.239 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT092429 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3419 nt |
Genomic location |
chr3+:141087332..141108679 |
Exon number |
4 |
Exons |
141087332..141087646,141088714..141088788,141100267..141100329,141105714..141108679 |
Genome context |
|
Sequence |
000001 GAAGCCAGGA AACTAGTTGG GGAGTGGCAC TCGCAGCTGC AGCAAATCTC AAAATAAAGA GGCAACGGCC TTTCTCTTCC 000080
000081 TCTCCATCTC CCTATAGCAC ACCTTTTATT TCTTTTCTTC TTTTTTTTAA GCCTCACGAA AGATTTTACT TGTAGATCAA 000160 000161 CTTTCAAAAT GTAGGAAGTC AGAATGGGTG ACATCATCAG AAAAATATGT GGAGCTGATC ACAAGAAGTG AAGAACCCAG 000240 000241 AGCACGAAAG CGGTTGTGAC TCCTGGGCCC AGGGAGTTGA CAGCGTCTGG GTTTCAGAGG AGCCAGCGCC TCCGAGTTGT 000320 000321 CTTGAAGTGA GGCTCTGCTG TAGTCCTGTT CTTCTGGCTC TAAGATCTGA ATGTTGTGAC CACTAATTTG CTCTTTCCTG 000400 000401 GAGAGTAACC CCAGTTTGGT CCACAAGGCT TGCTGCCCAA TCTTTGCCAA CAGTTGAACC AAGACTCTGA GGCTGATATG 000480 000481 CAATGTCACT TACAACATTA ATCAGATACT GCATTTAAGG TGAGCTGTCC CTTGCCTCCT CCTTCCCCAG TGCTCGTGTG 000560 000561 CTGCATGCAG TGCGTATCTT GCTTCTGCGA GCCTAAGATG GCAGGCAGGA TTAGCCGTGC TTGTGCTGTG TGTGCATGCT 000640 000641 GTGTCTAGAA TTCATTACAC GTTGCCTAGT ATTTCAGATG TGAGTATGTA AATGCTCTGT ATGCCATATC ATCTGGTAGC 000720 000721 GAAGACTTGT TTTTGCCTCA TTACAGCCTT AGATATTTCA ACATCACCTT TCATTTCCAA TTCATTTGCT TCTGGATGTT 000800 000801 TGTTTTTCAT CACATTCAAA ATATGATTTT ACCTTTTTTT TTTTAACAAA ACCAAAACCC CCCACAAACC CTAAAAACAA 000880 000881 AAACAACAAC AACAAAACTC TGCTACCAGA TGGTGTCTCT CCTTTCTTCG TGCATTTGCT GTCTTTTAAA TAATGTATGT 000960 000961 TGTATTGTTA ATTAATGTGA ATATCAAATT AAACACTTGA AACTTACATG TTTATTATGC AGGTAGGAGG CAAGGTGGAT 001040 001041 TCTATTTTTA ACTCTTATGC ACTCCATCAT GTGCAAGCAA CTTGGGTTCT CAAATTTGTA TTTTCAATGC TGGTATCAGT 001120 001121 GGTTTGATTT TCAGCAAATG TGACAGTGGC CTTTGCAGTG GTCAGCTCCG AGCTTTGAAC TCTCAGAGGA GGAAGGGGAA 001200 001201 AAAAATTCAA CACACCACCT CCTTGGTTGC AGTCTCAGAA AAACCTTGGA TGAGAAACTT CTTTTTTCAA TCCTGTTTTC 001280 001281 CTGTTGATAA ATTCAGTTCT GTGATCACAG TTCATTCAAG CTGTTCTGCG TATGATTTTT GTGTGTATGT GACAATTGCA 001360 001361 TCTAAAACTT GTGAGCAAGA AGACAGAGAA ATCAGTTGGT CTCCATCGCT TTACATAAAA ATGGCTGAGT GTCTTGTCAT 001440 001441 GCTAGCACTG CATTAAGTGA TGCATACAGG TAGGTTGAAA TTTGCATGTT TTTATAGTTT TTTTTGAGCC ATGCAGCAAG 001520 001521 AACATTAGAT GCATTAGAAT ATGACTTTTA AAAAAACAAA AATTAAATAA GACAGCTGTA ATCTTTTGGG GGAGGGTTTT 001600 001601 TAATTGGACA GCCTCTGCTA TTCAGATAGT ATATAAATGT ATAGCTTTTA CAAACTTAGT AAATGATTCT GCCATAAAAG 001680 001681 GGAGattttt tttaaaaaaa aatcatatat atGATAGGTG TGGTGCCATT AGACAACAAA AGAATTTTTT GAAAAGAGTG 001760 001761 ATGATTCAGC TCCATTTCAG CTTGAAACTA AAAATAAATG GGTTTCTGGA GATGATTTCA AAGAGCGTAA ACAAGCTTAA 001840 001841 TAAGAAACat taaaaatatt taaattttaa GAAGCGGTCT TTAAACGTGT TTATGAAAGA TGAAAATAAA AACTGATATG 001920 001921 CTTCCAAAAT TAATTTTAGG TAATATACAA GAATACATTA TATTATGTAT ATAATTTGGG GGGATGAGGA GTTACAATTT 002000 002001 TTAAAGAGGG AAATATTAAA TATAGATGGC CCTCTTAAAA GAAATAGAGC TTCACTAAAT GAAACCGAGC CCCTAGAATG 002080 002081 GTTCATTGCA GACCATATAG CTGTGGTTCT GGCACTTTTC AAAATAATTT CATGAGCTCT TTCTTTTGAA CTTAACTTCT 002160 002161 CAAATATATT TTAGTTTCAA ATTTAACACT GGGCcagaac ctgtttcctt ggtaaccaaa tcgtatttaa acatgtaata 002240 002241 acagATATGC AAAAGAATGT CTTTAAAAAG GAAACAAATG TTTAATGAAA AATTTACAGT TCTTTTTCCT CTCATATAGA 002320 002321 ATCTGAACTG GTTTTAGATG GTTTTTAATG CGGTCTTCAA GCCTTAAAAA TTAAGCCATG TTTCTAAACA TATAGAGAAA 002400 002401 GCTTGCACAG TGACAGCTTT TCTCTCCCTC CTTTGTGCTC AGTACTTTCA AAATTAAGGT TTTCTTTGCA GTATGCTCCA 002480 002481 GAATGCAGGT CAAGGTTTGT GTACAGAGGT GTAGTTTCAT TATCACAAGT TCACCAGCGC CACTGAAACA AAAGGTATTT 002560 002561 CAGAAATTCT GAGAATCAGA AAATGCTTGT ACTCTTGCCT TCCCTGATCC CTCCGTTGGT AACCTCAGTG CTGTCGGTAG 002640 002641 AAAAGGACCC ACATCCAAGC CTACCCCTCC AATGACAAGT GCACCCTGAA CCTTTGTGGA AATATCTCTA TAGGTGTGTT 002720 002721 AGGAAGATGG TGCTAAACCT GAAACCTCCC CGAGGTTTGC TTCAATGTGA AGAACATTGA GATTCAAAAC CATCTGTGTA 002800 002801 AATGGCTGCT TTATTCTAGC AGTTTAACTA ATATTCTATT CCATAGCACT ATCGTAGAAT TGAACCTCTC TAATGGGCTG 002880 002881 AAGGGTGGTG GTGGTTGTTG TCATGTTGTT TTGTGGCCAA CTAAAATATT TTGCTTGGAG TCTTTCTCTG GTTCAATTAT 002960 002961 TTTGGAACGT GATTCATCTC ATACTGATTT TGTTCTCCAG GCTTGCCATG AAATACCCTT CCTGCAACAC CTTTTTTTTT 003040 003041 TTTTTTTTTG GCTGTTGGGA GCCATTTTCC TTCTTGCCTG TGACTTTAAA TGACTAAGTA CATTTTGAAT ATAGTATCAA 003120 003121 TCAGAAGATT GTAAACTGAA GGGAAATATC AGAAACCTGA TTCAATATTG CCTATTTTTT TTAGTACCAA CAGCATTAAC 003200 003201 AGTTGCAATA GGATCAAGCT AATTGTCATT CGCTCTTGAG CAAATAATGA GCCAGGCATT TATAATTAAA ACACTACTGC 003280 003281 TAGTCAGAAA GCTTATAACT ACAATGTCTT CTATTTTGAT AGGCCAGTAC AAAGTAATCA TTTTGCACCT ATTTGAATCT 003360 003361 TAATTACAAG ATTAGATGGA TGCAATGCAA TTGTTTTACC ATTAAAATGA ATGCCTGAT |
Predicted Small Protein
Name | NONHSAT092429_smProtein_1964:2134 |
Length | 57 |
Molecular weight | 6583.6089 |
Aromaticity | 0.107142857143 |
Instability index | 54.3589285714 |
Isoelectric point | 4.87347412109 |
Runs | 7 |
Runs residual | 0.0282982045277 |
Runs probability | 0.00948848007671 |
Amino acid sequence | MYIIWGDEELQFLKREILNIDGPLKRNRASLNETEPLEWFIADHIAVVLALFKIIS |
Secondary structure | LEEELLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH |
PiMo | i??????????????????????????????????????????????????????? |