NONHSAT112316

From LncRNAWiki
Revision as of 11:26, 13 October 2014 by 73.162.128.239 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT112316

Source

NONCODE4.0

Same with

,

Classification

intronic(AS)

Length

1207 nt

Genomic location

chr6+:38555099..38556305

Exon number

1

Exons

38555099..38556305

Genome context

Sequence
000001 ATGAACAGAC AGTTGGACCT AAGTGGGAAG GTAATCATGA AAGCTCAACT TGGGGAGGAT ATTCCAAAAA TTCCTATTCA 000080
000081 TAATGAAGAT ATTAATATTA CTTATGATGA ATTAGTGCTA ATGATGCAAC GAGTTTTCAG GGGAAAACTT CTGCGTAATG 000160
000161 TTGAAGTAAC AATAAAGTAT AAAGATGCAG ATGACGATCT TATAACAATT TTTGATAGTT CTGATCTTTC CTTTGCAATT 000240
000241 CAGTGTAGTA GGACACTGAA ATTGACATTA TTTGTTAATG GCCAACGAAG ACCCCTTGAA TCAAGTCAGG TGAAATATCT 000320
000321 CTGTCGAGAA CTGACAGAAC TTTGAAATAA AGTGAATCAC TTATTGGATA GCTTGGAACC ACCTGGAAAA CCAGGACCTT 000400
000401 CCACTAATAT TCCTGAAAAT GTTACTGTGA ATGGTAGGGA AGAAAAGCCT GCTTCTTCGG ATTCTTCTGG AAAACAGTCT 000480
000481 ACTCAGGTTA TGGCAGCAAG TATGTCAGCT TTTGACCCTT TTAAAAAACC AAGATGAAAT AAAAAATAAT GTTACGTCGG 000560
000561 CATTTGGCTT AACAGATGAT CAGGTTTCAG GGCAACCCAG TGCTCCTGCA GAAGACTGTT CAGGAACATC TGACAGCATT 000640
000641 GCCGCCTCCT CCTCAGTAGC AGCTCACCCA CCAGGAGTTC AGCCACAGCA ACCACCATAT ACAGAAGCTA AGATACAAGC 000720
000721 AGGTCAGACT GAAAGTCAGC TGTATCAATA GTACCAGCAA CAGGCTAGCT ATGGTGCACC GTGTCTGCGG GCTCTACCTC 000800
000801 AGCAGCCTCA ACAGTATGGT ATTCAGTATT CAAAAAGCCA GAGTCAGCAG ACTGGACTCC AAACAACCTC AGCAGTTCCA 000880
000881 AGGATATGGC CAGCAACCAA CTACCCAGGC ACCAGCTCCT GCCTTTTTGG TCAGCCTCAA CAACTGCCTG CTCAGCTGCC 000960
000961 ACACAGTACC AGGCAAGCAA TTATCCTGCA CAAATTTATA CTACCCAAAC TTTTCAGCCT ACTAATTATA CTGTGGCCCC 001040
001041 TGCCTCTCAA CCTAGAATGG CTCCAAGCCA ACCTGGGGCC TATAGACCAA GATCAAGTTT TACTTCACTT CCTGTAAGTA 001120
001121 GCATGACCCC TCCTCCAACT GGGCCTAATC CTTATATGTC CTCCCTTTGG TCAGGGCTAT ACCAAACCTG GACCTGGTTA 001200
001201 TCGATAA
[back to top]

Predicted Small Protein

Name NONHSAT112316_smProtein_770:1024
Length 85
Molecular weight 9344.65
Aromaticity 0.107142857143
Instability index 56.425
Isoelectric point 9.30096435547
Runs 12
Runs residual 0.00887170154686
Runs probability 0.0411072837543
Amino acid sequence MVHRVCGLYLSSLNSMVFSIQKARVSRLDSKQPQQFQGYGQQPTTQAPAPAFLVSLNNCL
LSCHTVPGKQLSCTNLYYPNFSAY
Secondary structure LEEEEEEEEHHHHHHHHHHHHHHHHHLLLLLLLHHHLLLLLLLLLLLLLLLLEEELLLLE
EEEEELLLLEEEELLLLLLLLLLL
PRMN -
PiMo -