NONHSAT139281

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT139281

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1113 nt

Genomic location

chrY+:2477306..2506370

Exon number

10

Exons

2477306..2477522,2479037..2479079,2480191..2480259,2483857..2484010,2486781..2486825,2487470..2487538,2490731..2490775,2491426..2491494,2494638..2494683,2506015..2506370

Genome context

Sequence
000001 CTGGGCTGAG TTTGCAGGGC TGCTCCCCTC ACCCAACCCC TTCGAGTCCT CCGCGGGCTC CGCCCCACCC GGCCCGTGGG 000080
000081 GGAGGTTCCG TCCCGCCGCC TTCGCCCGCG CGCTGCACTC GCGGACGATC TCTGCTCGCC TTGGGCGCGC CGTGGCGCGC 000160
000161 GGGGCCGTGC TGGCGCTGCG GCTCCTCGGC CTGCTCCGCC GTCTGGTGGC CGCCCCGGGC TGACTTTGAC TTAGCGATGC 000240
000241 CTTTCCTGAT GGAGGAAACA GTGACCCAGC ACCACCTAAT GCCCCCAAAC CAAAGCCAGA TCCAAACCCC AACCGACCTG 000320
000321 GTTTCACTGG TGACCCAGCA CCACCTAATC CCCCCAAACC AAAGCCAGAT CCAAATCCCA ACTGACCTGG TTTCACTGAT 000400
000401 AAGAGCCTCT AACCCTACGG GGTGGTCTCT ATGTTGTTTA CCTGGCAGTG ATGTCCGTGT CATCTGAGAA GAGGAGATTT 000480
000481 CAGGGGCTGA CTTTGACTTA GCAGATGCCT TTCGTGATGG AGGAAATAAC GACCCAGCAC CTCTTAATTC ACCCAAGCTG 000560
000561 AAGCCAAATG CGAACCCTGA GCAGCCTGGA TTCATTGGGG ATGACTTTGA CTTAGCAGAT GCCTTACATG ACAAAGGAAA 000640
000641 CTACGAGCCA GCACCACTGA ACCCACCCAA ACCAAAGCCA AATCCAAACC CCAAGCAGCC TGATTCCACC GGGGATGACT 000720
000721 TTGATTTCAC AGATGTTTCT TCATGGTGAA CGAAACAGGG AGTTGCCTCG ATTCTGATGT GTTTGCTTCG GTGCTCTGTG 000800
000801 TATTGTATTC ATCCCACTCT TCAATTCATA AACTCTGGAG ATTCTTCAAT TCACTGGGCA AACCATATGC CTAAGTCTAT 000880
000881 CCTCTGATGG AGGCTCGTAC ATGCAAAATC CAATAGCAAC CTGGGAAGAT TTCAGTCAAG ACCCAAGAGG AGGCTGGCAT 000960
000961 CAGGCTCTCG GTCACCGATC TTCACATTCA GGTTTCCTGA TGCACTTTGC GACTCTTTGG GCAACCTCTG GACTCCTTGT 001040
001041 TCCCAGGGTC CACATTTAGT TTTATCTTTA CTGCATTGCT TTTATGAAAA AGAATAAAAT TGGATGAAAC AGA
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Predicted Small Protein

Name NONHSAT139281_smProtein_236:466
Length 77
Molecular weight 8451.6687
Aromaticity 0.0263157894737
Instability index 48.1907894737
Isoelectric point 5.60296630859
Runs 13
Runs residual 0.0296430732002
Runs probability 0.045690486867
Amino acid sequence MPFLMEETVTQHHLMPPNQSQIQTPTDLVSLVTQHHLIPPNQSQIQIPTDLVSLIRASNP
TGWSLCCLPGSDVRVI
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHLLEELLLLLLLEEELLLLLEEEEELLL
LLLEEEELLLLLEEEL
PRMN -
PiMo -