NONHSAT144717
Revision as of 08:03, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT144717 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3444 nt |
Genomic location |
chr17-:414737..418180 |
Exon number |
1 |
Exons |
414737..418180 |
Genome context |
|
Sequence |
000001 TCTGATCTCC AAACCCAGCT CAGGGATTGA AGCTAACTAC CGCCACTCCT TCCTCTCTCG AAGAACAAAG AGCCAGTACC 000080
000081 CAGGGCTCTG CCCACCCCCG AGAAGGGGTG CCTGATTTCT TATGTCTAGG GTGGCTCCTC TGTGCAGATC AGACAGGACT 000160 000161 GAGAGCAGGC AAGCTGAGAC CAGCATGACC AGTACAGGGC ACGCAGAGCG TGGGGGCAGG TCCGAGGCTG CTGCTCGATG 000240 000241 CAGGGTATGA CACCAACCCT TCCTGAATTG CCATCGGATG AGGAGACCTG GTTCCCTGTT GAAAGAATGC CAGGGGAAAT 000320 000321 GCTGCATGTG CACAGCTGGA AATGGGGTTC CTTCTCTAGG AAGAGCACTC GGAATAACCT GCTGGAAATG GGGTTCCTTC 000400 000401 CCTAGGAAGA GCACTCAGAA TAACCTGCTG GAAATGGGAT TCCTTGGCTA GGAAGAGCAC TCAGAATAAC CTGCTGGAAA 000480 000481 TGGGATTCCT TGGCTAGGAA GAGCACTCAG AATAACCTGC TGGAAATGGG ATTCCTTACC TAGGAAGAGC ACTCGGAATA 000560 000561 ACCTGCTGGA AATGGGATTC CTTACCTAGG AAGAGCACTC GGAATAACCT GCTGGAAATG GGGTTCCTTC CCTAGGAAGA 000640 000641 GCACTCGGAA TAACCTGCTG GAAATGGGGT TCCTTCCCTA GGAAGAGCAC TCGGAATAAC CTGCTGGAAA TGGGGTTCCT 000720 000721 TCGCTAGGAA GAGCACTCGG AATAACCTGC TGGAAATGGG ATTCCTTCGC TAGGAAGAGC ACTCGGAATA ACCTGCTGGA 000800 000801 AATGGGATTC CTTCGCTAGG AAGAGCACTC GGAATAACCT GCTGGAAATG AGATTCCTTC CCTAGGAAGA GCACTCGGAA 000880 000881 TAACCTGCTG GAAATGGGAT TCCTTCGCTA GGAAGAGCAC TCGGAATAAC CTGCTGGAAA TGAGATTCCT TCGCTAGGAA 000960 000961 GAGCACTCGG AATAACCTGC TGGAAATGGG ATTCCTTCGC TAGGAAGAGC ACTCGGAATA ACCTGCTGGA AATGAGATTC 001040 001041 CTTCGCTAGG AAGAGCACTC GGAATAACCT GCTGGAAATG GGATTCCTTC GCTAGGAAGA GCACTCGGAA TAACCTGCTG 001120 001121 GAAATGGGAT TCCTTCGCTA GGAAGAGCAC TCGGAATAAC CTGCTGGAAA TGGGATTCCT TCCCTAGGAA GAGCACTCGG 001200 001201 AATAACCTGC TGGAAATGAG ATTCCTTCCC TAGGAAGAGC ACTCGGAATA ACCTGCTGGA AATGGGATTC CTTCGCTAGG 001280 001281 AAGAGCACTC GGAATAACCT GCTGGAAATG GGATTCCTTC GCTAGGAAGA GCACTCAGAA CAACCTGCCT GCTTGAGGGT 001360 001361 GACAGCAAGT GTCTCACACT TCTCGTCTAC TCCAAGTCAG ATTCCTAAAA ATAAAATAGA GCTCCAATGG GCAATTTAAG 001440 001441 CAAAAGCCTT AGAAACATGG ACACCTGAAA TGCTGGCCTA CATGAAGGGT ACGATGACAT TTTATATATT AAATAAAAAT 001520 001521 TCCCAGTCCT GTTTTAGTAT TCATCAGAAT AGCCTCTTGG ACCCTCGAAG TTCTACACCT TTGGGAGATA TAAATTTCCT 001600 001601 TAAAATAAAG GGATTGCTTC TTTGTGTAAA TAGCTTTCAT TTTCTCCATC TGGAAGTGAT TTCTGCCTGC ATGTTGGAGC 001680 001681 ACAAAATACT GCAGTTAATT AAAGCATTAC TGGATGTCAT TTGCTAGAAT GTATTTCCTT ACTGCTGACA GAAAACAGAA 001760 001761 CAGACTCTAG GAAAGAAGTA GCAAGTCCGT GACCCTGGCC GCTCCTGGTG GCTGCCCTTC TCCCTTCCCT GACAGTCTAA 001840 001841 GGAAGCAACG CGTGGGAGCA GAATGTGGCC GACTGAGCCC AGTCCTGACC TGCCCAGTTG CAGTGGAGCC TGTCTGTAAT 001920 001921 GTTGTGTAAA GTGTTTTGCT TCTGACTTGG AACCCTACTT GCCCTGTGAA TTTCTATCCT GTGAACCTTC CCTTCTCTGT 002000 002001 CCTTACCGTT CCCATCACAG CCTGCTCTTC CAGTGACGGC CAAGTGATTT CTCTCCTGCA CGCATGAGTC CATCCTGTTT 002080 002081 CCTTAGTAGC TGGATGGACG TTTTGCCATG AAAACTCTTT GGGAAGTCTT GTGTCCTTTA GTGATTTCTC TCCTGCACGC 002160 002161 ATGAGTCCAT CCTGTTTCCT TAGTAGCTGG TTGGACGTTT TTGCCATGAA AACTCTTCGG GAAGTCCTGT GTCCTTTCAA 002240 002241 CAGGGGAAAA CTGGCTGCGG CCCTTCCATT AGGCTCCAGG ATCATTACCT CGTTTCCATT CTTTCTTTTC AACAGCTCCC 002320 002321 CACTTTACTA GGGAAGCCAA GGGATCAACC TAATGAGAAA AGAACCTTCC CTGTAGCCCA CCTGGAAGGG CATTGCCTGC 002400 002401 CAGCTCCTTC CTTCTCACCT ATGTGAACAG GAGGGAAGAT GCCGGCGATC CATGGATCTG TGGGACATGA AGGACGTGTC 002480 002481 CATCAGAAAT GAAAGCAGCC TGGGATTGGA AGCATCCACA GAAGACTTGA TCTGCAGGTC TTGATTTGGA CCTGGCACTT 002560 002561 TGACACCAGG CGAGTCACTG ATCCCCTGAG CATCCATTTT CAATATTGGT GAGAGGGGAT TATAATGAAT ATTGGCTGTG 002640 002641 AAGGTCACAC AAGACCGGGC TATATGCACT TGCTCTGCCA TAAGGCAGTG TGAAGTGTGT TCGTGATCAC TTGTGGGCGG 002720 002721 GAGCCTGTGG CTGTCTTGCC TGGACTGGCT TTTTTAAACA TGGATGAGTG GTGACAAATC CTGCGGCCGT GTGCAGGCTA 002800 002801 CATCCGCAGC GAGCTCCGCA TATCTGGTCT TTGCCTTTTT AGGTCATGAC TGTAATATCA AGCTTACACG AGAGTTTTAA 002880 002881 AAGACTGAGC AGTATCCCCT TCCCCTGGCA GCTGCTGCTT CCGTAGCATT TAGGGATAAA CCTGCAGACA CTGAGAAGAG 002960 002961 AGCTTCCTCC CTCCTGGGGC TGGTGGCGAG GCTGCCTGTT GTGGAAAATA GGGCATGTCT CCTGTGAATG CGAATTGCGA 003040 003041 GGGTTGCCAA AGCCTCCCTT CCAAGAAACT TGCTTAGGTG TCTGGTGTCC ACAGACCAGA CTCTTCTCCC GACAGGGACA 003120 003121 AAAATTCTTG CCTGCCTTTC TTTTTCTTTT TTTTCCTTTT ACTTATTCTT GCCCTTTTTC TTCTTCTTCT TCTTTAGGTA 003200 003201 TGATGCCCCC CAAAAAACTA AGCAAGATTA ACTTGGGACA GGCAGTTCTA ACTGGGAAGC CTGAGCTCAC AGGCTGTTTG 003280 003281 GATTACTTTC CAATTGTGTT TCAAAGATGT TTAGACTTTT CCCAAGGCCA GCTGAATCCT TATAATCAGC CCAAAAGTTC 003360 003361 CTTTCTGTTT CTGTCTGTCC CCTTTGAGGG TGTTGACTCA GAGAACCTGG GGCAATATGA GATGTTAAAA TAAAAATAGC 003440 003441 GTCC |
Predicted Small Protein
Name | NONHSAT144717_smProtein_1469:1726 |
Length | 86 |
Molecular weight | 9641.4773 |
Aromaticity | 0.0823529411765 |
Instability index | 49.4612941176 |
Isoelectric point | 8.42620849609 |
Runs | 13 |
Runs residual | 0.0163992869875 |
Runs probability | 0.0422051010286 |
Amino acid sequence | MLAYMKGTMTFYILNKNSQSCFSIHQNSLLDPRSSTPLGDINFLKIKGLLLCVNSFHFLH LEVISACMLEHKILQLIKALLDVIC |
Secondary structure | LHHHHLLEEEEEEELLLLHHHEEHHHHHLLLLLLLLLLLLHHHHHHHLHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHH HHHHHHHHLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTT TTTTTTTTiiiiiiiiiiiiiiiii |