NONHSAT130933

From LncRNAWiki
Revision as of 11:24, 13 October 2014 by 73.162.128.239 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT130933

Source

NONCODE4.0

Same with

,

Classification

sense

Length

585 nt

Genomic location

chr9-:35108342..35115859

Exon number

2

Exons

35108342..35108734,35115668..35115859

Genome context

Sequence
000001 AGTAACTGCC CCAACCACTA CCACGTCCCC AAGTGCAACG GGACCCACGG AACTACAGGT GTGGGGCAGG GTGAGCGTGG 000080
000081 AAGAAGGGAC GCGGATGGGG GTGCGCTTTG CAGACGATCT GGAGACTGCT GTGTGTTGAG GGAAGATACG AAGTCGCGGG 000160
000161 AGCAGTTGGG GACTCAATGT GTGGGCAACA AGGGTCCTGC TGAGCTCAGG AGCTGCACGG AATGGTGGCA GTCACCTTGC 000240
000241 CAGTGCAGCA GGCATGGATC AGACTGCAAG CTAGGGGCAC GAGGCATCAG TTGGGAAGAG GGGACGCACA GCTAGGCTTG 000320
000321 AGGCCTCTTC ATCGGGGTAA GTACCAGGGA GAAGAGGGGG AAGTGTGTCC AGTAAGAAGC CTGAGCTAAA CCTGTCACCC 000400
000401 TCTCAGGAGT TCTGAGAGTG GTCTCTATAT TCCATTAGTC CATCCAGGGA TTTGTACACA TTCATCCTTG GGAACCCATC 000480
000481 AAAGTCACCC CTTTAGGCAA GGAGAGGGTC TGAAACTCAG CTGGAAGGAA GAAGACTCAT TGATTCCCCT GACCACCTTT 000560
000561 TCTTCTCTTC TCTTACACAG ATGTC
[back to top]

Predicted Small Protein

Name NONHSAT130933_smProtein_221:388
Length 56
Molecular weight 6120.9872
Aromaticity 0.0363636363636
Instability index 45.6727272727
Isoelectric point 10.7129516602
Runs 9
Runs residual 0.0121212121212
Runs probability 0.0328073171211
Amino acid sequence MVAVTLPVQQAWIRLQARGTRHQLGRGDAQLGLRPLHRGKYQGEEGEVCPVRSLS
Secondary structure LEEEELLHHHHHHHHHHLLLLLLLLLLLLEELLLLLLLLLLLLLLLEEEELLLLL
PRMN -
PiMo -